Overview

I am mainly interested in evolutionary genomics with a special interest in robust phylogenetic inferrence, outlier detection in evolutionary studies (rogue taxa/influent sites), phylogenetic comparative methods. I'm also interested in metagenomics, with a special interest in statistical models for multivariate count data, such as encountered in metagenomics studies.

Software

Here are some softwares / scripts I developed, supervised or contributed to:

2019
MetaDAF   project
Benchmark R packages for Microbiome Differential Abundance studies, Internship project of Léonard Dubois.
2019
phyloseq-extended   project
Additional functions for R package phyloseq
2017
PLNmodels   package, website and project and
R package to analyze multivariate count using the Poisson Log-Normal distribution. Includes PCA, Network Inference, LDA, Mixture Models, etc.
2016
FROGS   website, project
Python-based pipeline to reconstruct OTU count table from raw sequence reads
2015
PhylogeneticEM   package, project
R package to detect adaptive shifts on phylogenies
2015
Local specifity index   scripts (includes a vignette)
R scripts to compute the Local Specifity Index, as used in Mariadassou et al. (2015)
2012
Taxon Influence Index   scripts
R scripts to compute Taxon Influence Index, as used in Mariadassou et al. (2012)
 

Publications

Under construction!

Some references and/or preprint may be missing.


  1. Maxence Jollet, Mahendra Mariadassou, Olivier Rué, Laurence Pessemesse, Vincent Ollendorff, Sofiane Ramdani, Barbara Vernus, Anne Bonnieu, Christelle Bertrand-Gaday, Bénédicte Goustard, and Christelle Koechlin-Ramonatxo. Insight into the Role of Gut Microbiota in Duchenne Muscular Dystrophy: An Age-Related Study in Mdx Mice. The American Journal of Pathology, 194(2) :264–279, 2024. 
    • @article{Jollet2024,
  author = {Jollet, Maxence and Mariadassou, Mahendra and Rué, Olivier and Pessemesse, Laurence and Ollendorff, Vincent and Ramdani, Sofiane and Vernus, Barbara and Bonnieu, Anne and Bertrand-Gaday, Christelle and Goustard, Bénédicte and Koechlin-Ramonatxo, Christelle},
  title = {Insight into the Role of Gut Microbiota in Duchenne Muscular Dystrophy: An Age-Related Study in Mdx Mice},
  journal = {The American Journal of Pathology},
  year = {2024},
  volume = {194},
  number = {2},
  pages = {264-279},
  issn = {0002-9440},
  doi = {10.1016/j.ajpath.2023.10.010},
  url = {https://www.sciencedirect.com/science/article/pii/S0002944023004200},
  pdf = {https://www.sciencedirect.com/science/article/pii/S0002944023004200/pdfft?md5=3d45639d27f7dd29c311aaa2f1f39951&pid=1-s2.0-S0002944023004200-main.pdf}
}

  2. F. Irlinger, M. Mariadassou, E. Dugat-Bony, O. Rué, C.Neuvéglise, P. Renault, E. Rifa, S. Theil, V. Loux, C. Cruaud, F. Gavory, V. Barbe, R. Lasbleiz, F. Gaucheron, C. Spelle, and C. Delbès. Evidence of microbial signatures in French Protected Designation of Origin milks and cheeses, 2024. 
    • @unpublished{Irlinger2024,
  author = {Irlinger, F. and Mariadassou, M. and Dugat-Bony, E. and Rué, O. and C.Neuvéglise and Renault, P. and Rifa, E. and Theil, S. and Loux, V. and Cruaud, C. and Gavory, F. and Barbe, V. and Lasbleiz, R. and Gaucheron, F. and Spelle, C. and Delbès, C.},
  title = {Evidence of microbial signatures in French Protected Designation of Origin milks and cheeses},
  year = {2024},
  journal = {submitted to Nature Food},
  owner = {mmariadasso},
  timestamp = {2023.12.06}
}

  3. Anne Thierry, Marie-Noelle Madec, Victoria Chuat, Anne-Sophie Bage, Olivier Picard, Cécile Grondin, Olivier Rué, Mahendra Mariadassou, Laurent Marché, and Florence Valence. Microbial communities of a variety of 75 homemade fermented vegetables. Frontiers in Microbiology, 14 2023. 
    • @article{Thierry2023,
  author = {Thierry, Anne and Madec, Marie-Noelle and Chuat, Victoria and Bage, Anne-Sophie and Picard, Olivier and Grondin, Cécile and Rué, Olivier and Mariadassou, Mahendra and Marché, Laurent and Valence, Florence},
  title = {Microbial communities of a variety of 75 homemade fermented vegetables},
  journal = {Frontiers in Microbiology},
  year = {2023},
  volume = {14},
  issn = {1664-302X},
  doi = {10.3389/fmicb.2023.1323424},
  url = {https://www.frontiersin.org/articles/10.3389/fmicb.2023.1323424},
  pdf = {https://www.frontiersin.org/articles/10.3389/fmicb.2023.1323424/pdf?isPublishedV2=False}
}

  4. Mahendra Mariadassou, Laurent X Nouvel, Fabienne Constant, Diego P Morgavi, Lucie Rault, Sarah Barbey, Emmanuelle Helloin, Olivier Rué, Sophie Schbath, Frederic Launay, Olivier Sandra, Rachel Lefebvre, Yves Le Loir, Pierre Germon, Christine Citti, and Sergine Even. Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd. Animal Microbiome, 5(1) :1–17, 2023. 
    • @article{mariadassou2023microbiota,
  title = {Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd},
  author = {Mariadassou, Mahendra and Nouvel, Laurent X and Constant, Fabienne and Morgavi, Diego P and Rault, Lucie and Barbey, Sarah and Helloin, Emmanuelle and Rué, Olivier and Schbath, Sophie and Launay, Frederic and Sandra, Olivier and Lefebvre, Rachel and Le Loir, Yves and Germon, Pierre and Citti, Christine and Even, Sergine},
  journal = {Animal Microbiome},
  volume = {5},
  number = {1},
  pages = {1--17},
  year = {2023},
  doi = {10.1186/s42523-023-00252-w},
  url = {https://doi.org/10.1186/s42523-023-00252-w},
  pdf = {https://animalmicrobiome.biomedcentral.com/counter/pdf/10.1186/s42523-023-00252-w.pdf},
  publisher = {BioMed Central}
}

  5. Benoit Goutorbe, Anne-Laure Abraham, Mahendra Mariadassou, Anne Plauzolles, Ghislain Bidaut, Philippe Halfon, and Sophie Schbath. Characterizing the limits of shallow shotgun metagenomics for taxonomic profiling of human gut microbiota in clinical studies, 2023. 
    • @unpublished{goutorbe2022characterizing,
  title = {Characterizing the limits of shallow shotgun metagenomics for taxonomic profiling of human gut microbiota in clinical studies},
  author = {Goutorbe, Benoit and Abraham, Anne-Laure and Mariadassou, Mahendra and Plauzolles, Anne and Bidaut, Ghislain and Halfon, Philippe and Schbath, Sophie},
  year = {2023},
  journal = {submitted to mSystems},
  volume = {under revision}
}

  6. Camille Champion, Raphaelle Momal, Emmanuelle Le Chatelier, Mahendra Mariadassou, and Magali Berland. OneNet – One network to rule them all: consensus network inference from microbiome data, 2023. 
    • @unpublished{Champion2023,
  author = {Champion, Camille and Momal, Raphaelle and Chatelier, Emmanuelle Le and Mariadassou, Mahendra and Berland, Magali},
  title = {OneNet – One network to rule them all: consensus network inference from microbiome data},
  journal = {submitted to Plos Comp. Biol.},
  year = {2023},
  doi = {10.1101/2023.05.05.539529},
  owner = {mmariadasso},
  publisher = {Cold Spring Harbor Laboratory},
  timestamp = {2023.12.06}
}

  7. Semi Zouiouich, Mahendra Mariadassou, Olivier Rué, Emily Vogtmann, Inge Huybrechts, Gianluca Severi, Marie-Christine Boutron-Ruault, Carlo Senore, Alessio Naccarati, Giulio Mengozzi, Zisis Kozlakidis, Mazda Jenab, Rashmi Sinha, Marc J. Gunter, and Marion Leclerc. Comparison of Fecal Sample Collection Methods for Microbial Analysis Embedded within Colorectal Cancer Screening Programs. Cancer Epidemiology, Biomarkers & Prevention, 31(2) :305–314, 2022. 
    • @article{10.1158/1055-9965.EPI-21-0188,
  author = {Zouiouich, Semi and Mariadassou, Mahendra and Rué, Olivier and Vogtmann, Emily and Huybrechts, Inge and Severi, Gianluca and Boutron-Ruault, Marie-Christine and Senore, Carlo and Naccarati, Alessio and Mengozzi, Giulio and Kozlakidis, Zisis and Jenab, Mazda and Sinha, Rashmi and Gunter, Marc J. and Leclerc, Marion},
  title = ,
  journal = {Cancer Epidemiology, Biomarkers & Prevention},
  volume = {31},
  number = {2},
  pages = {305-314},
  year = {2022},
  month = feb,
  issn = {1055-9965},
  doi = {10.1158/1055-9965.EPI-21-0188},
  url = {https://doi.org/10.1158/1055-9965.EPI-21-0188},
  pdf = {https://aacrjournals.org/cebp/article-pdf/31/2/305/3035218/305.pdf},
  month_numeric = {2}
}

  8. Amandine Selle, Carole Brosseau, Angéline Duval, Grégory Bouchaud, Anais Rousseaux, Aurélia Bruneau, Claire Cherbuy, Mahendra Mariadassou, Véronique Cariou, Sebastien Barbarot, and Marie Bodinier. Food allergy prevention in progeny by prebiotic supplementation during pregnancy in a preclinical study. Frontiers in Immunology, 12 :4832, 2022. 
    • @article{Selle2021,
  title = {Food allergy prevention in progeny by prebiotic supplementation during pregnancy in a preclinical study},
  author = {Selle, Amandine and Brosseau, Carole and Duval, Angéline and Bouchaud, Grégory and Rousseaux, Anais and Bruneau, Aurélia and Cherbuy, Claire and Mariadassou, Mahendra and Cariou, Véronique and Barbarot, Sebastien and Bodinier, Marie},
  journal = {Frontiers in Immunology},
  volume = {12},
  pages = {4832},
  year = {2022},
  url = {https://www.frontiersin.org/article/10.3389/fimmu.2021.745535},
  doi = {10.3389/fimmu.2021.745535},
  pdf = {https://www.frontiersin.org/articles/10.3389/fimmu.2021.745535/pdf}
}

  9. Vuong Quoc Hoang Ngo, François Enault, Cédric Midoux, Mahendra Mariadassou, Olivier Chapleur, Laurent Mazéas, Valentin Loux, Théodore Bouchez, Mart Krupovic, and Ariane Bize. Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics. Environmental Microbiology, 24(10) :4853–4868, 2022. 
    • @article{Ngo2022,
  author = {Ngo, Vuong Quoc Hoang and Enault, François and Midoux, Cédric and Mariadassou, Mahendra and Chapleur, Olivier and Mazéas, Laurent and Loux, Valentin and Bouchez, Théodore and Krupovic, Mart and Bize, Ariane},
  title = {Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics},
  journal = {Environmental Microbiology},
  volume = {24},
  number = {10},
  pages = {4853--4868},
  year = {2022},
  publisher = {Wiley},
  month = jul,
  doi = {https://doi.org/10.1111/1462-2920.16120},
  url = {https://sfamjournals.onlinelibrary.wiley.com/doi/abs/10.1111/1462-2920.16120},
  eprint = {https://sfamjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/1462-2920.16120},
  pdf = {https://sfamjournals.onlinelibrary.wiley.com/doi/epdf/10.1111/1462-2920.16120},
  month_numeric = {7}
}

  10. Julien Chiquet, Marie-Josée Cros, Mahendra Mariadassou, Nathalie Peyrard, and Stéphane Robin. The Poisson Log-Normal Model: A Generic Framework for Analyzing Joint Abundance Distributions. In: Gimenez, O. and Peyrard, N. (eds.) Statistical Approaches for Hidden Variables in Ecology, pp. 157–180, Wiley-ISTE, 2022. 
    • @inbook{Chiquet2022,
  title = {The Poisson Log-Normal Model: A Generic Framework for Analyzing Joint Abundance Distributions},
  pages = {157--180},
  booktitle = {Statistical Approaches for Hidden Variables in Ecology},
  publisher = {Wiley-ISTE},
  year = {2022},
  author = {Chiquet, Julien and Cros, Marie-Josée and Mariadassou, Mahendra and Peyrard, Nathalie and Robin, Stéphane},
  editor = {Gimenez, Olivier and Peyrard, Nathalie},
  month = dec,
  isbn = {9781789450477},
  optlink = {https://www.amazon.com/dp/1789450470/},
  month_numeric = {12}
}

  11. Julien Chiquet, Marie-Josée Cros, Mahendra Mariadassou, Nathalie Peyrard, and Stéphane Robin. Le modèle Poisson log-normal pour l’analyse de distributions jointes d’abondance. In: Gimenez, O. and Peyrard, N. (eds.) Approches statistiques pour les variables cachées en écologie, pp. 175–199, ISTE group, 2022. 
    • @inbook{Chiquet2023,
  title = {Le modèle Poisson log-normal pour l'analyse de distributions jointes d'abondance},
  pages = {175--199},
  booktitle = {Approches statistiques pour les variables cachées en écologie},
  publisher = {ISTE group},
  year = {2022},
  author = {Chiquet, Julien and Cros, Marie-Josée and Mariadassou, Mahendra and Peyrard, Nathalie and Robin, Stéphane},
  editor = {Gimenez, Olivier and Peyrard, Nathalie},
  month = aug,
  isbn = {9781789480474},
  optlink = {https://www.amazon.fr/Approches-statistiques-variables-cach%C3%A9es-%C3%A9cologie/dp/1789480477},
  month_numeric = {8}
}

  12. Antoine Bichat, Christophe Ambroise, and Mahendra Mariadassou. Hierarchical correction of p-values via an ultrametric tree running Ornstein-Uhlenbeck process. Computational Statistics, 37(3) :995–1013, 2022. 
    • @article{bichat2022hierarchical,
  title = {Hierarchical correction of p-values via an ultrametric tree running Ornstein-Uhlenbeck process},
  author = {Bichat, Antoine and Ambroise, Christophe and Mariadassou, Mahendra},
  journal = {Computational Statistics},
  volume = {37},
  number = {3},
  pages = {995--1013},
  year = {2022},
  publisher = {Springer},
  url = {http://link.springer.com/article/10.1007/s00180-021-01148-6},
  doi = {10.1007/s00180-021-01148-6},
  pdf = {https://link.springer.com/content/pdf/10.1007/s00180-021-01148-6.pdf}
}

  13. Paul Bastide, Mahendra Mariadassou, and Stéphane Robin. Modèles d’évolution de caractères continus. In: Didier, G. and Guindon, S. (eds.) Modèles et méthodes pour l’évolution biologique, pp. 47–85, ISTE Group, 2022. 
    • @inbook{bastide:hal-03762880,
  title = ,
  author = {Bastide, Paul and Mariadassou, Mahendra and Robin, Stéphane},
  editor = {Didier, Gilles and Guindon, Stéphane},
  url = {https://hal.archives-ouvertes.fr/hal-03762880},
  booktitle = ,
  publisher = ,
  pages = {47 - 85},
  year = {2022},
  month = jul,
  doi = {10.51926/iste.9069.ch3},
  keywords = {modèle d'évolution ; traits quantitatifs ; méthodes phylogénétiques comparatives ; mouvement brownien ; processus d'Ornstein-Uhlenbeck ; calcul de vraisemblance},
  pdf = {https://hal.archives-ouvertes.fr/hal-03762880/file/chapitre_hal.pdf},
  hal_id = {hal-03762880},
  hal_version = {v1},
  month_numeric = {7}
}

  14. Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems. eLife, 11 :e78129, 2022. 
    • @article{Richter2022,
  title = {Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems},
  author = {},
  volume = {11},
  year = {2022},
  month = aug,
  pub_date = {2022-08-03},
  pages = {e78129},
  citation = {eLife 2022;11:e78129},
  doi = {10.7554/eLife.78129},
  url = {https://doi.org/10.7554/eLife.78129},
  journal = {eLife},
  issn = {2050-084X},
  pdf = {https://elifesciences.org/download/aHR0cHM6Ly9jZG4uZWxpZmVzY2llbmNlcy5vcmcvYXJ0aWNsZXMvNzgxMjkvZWxpZmUtNzgxMjktdjEucGRmP2Nhbm9uaWNhbFVyaT1odHRwczovL2VsaWZlc2NpZW5jZXMub3JnL2FydGljbGVzLzc4MTI5/elife-78129-v1.pdf?_hash=84cJGQ8IyGlmYH01ZvsbITElPXHN6qOAs3LCEKQkWOk%3D},
  month_numeric = {8}
}

  15. Xufei Zhang, Magali Monnoye, Mahendra Mariadassou, Fabienne Beguet-Crespel, Nicolas Lapaque, Christine Heberden, and Veronique Douard. Glucose but not fructose alters the intestinal paracellular permeability in association with gut inflammation and dysbiosis in mice. Frontiers in Immunology, 12 :4479, 2021. 
    • @article{Zhang2021,
  title = {Glucose but not fructose alters the  intestinal paracellular permeability in association with gut inflammation and dysbiosis in mice},
  author = {Zhang, Xufei and Monnoye, Magali and Mariadassou, Mahendra and Beguet-Crespel, Fabienne and Lapaque, Nicolas and Heberden, Christine and Douard, Veronique},
  year = {2021},
  journal = {Frontiers in Immunology},
  url = {https://www.frontiersin.org/article/10.3389/fimmu.2021.742584},
  doi = {10.3389/fimmu.2021.742584},
  volume = {12},
  pages = {4479},
  pdf = {https://www.frontiersin.org/articles/10.3389/fimmu.2021.742584/pdf}
}

  16. Mahendra Mariadassou, Marie Suez, Sanbandam Sathyakumar, Alain Vignal, Mariangela Arca, Pierre Nicolas, Thomas Faraut, Diane Esquerré, Masahide Nishibori, Agathe Vieaud, Chih-Feng Chen, Hung Manh Pham, Yannick Roman, Frédéric Hospital, Tatiana Zerjal, Xavier Rognon, and Michèle Tixier-Boichard. Unraveling the history of the genus Gallus through whole genome sequencing. Molecular Phylogenetics and Evolution, 158 :107044, 2021. 
    • @article{Mariadassou2021,
  title = {Unraveling the history of the genus Gallus through whole genome sequencing},
  journal = {Molecular Phylogenetics and Evolution},
  volume = {158},
  pages = {107044},
  year = {2021},
  issn = {1055-7903},
  doi = {https://doi.org/10.1016/j.ympev.2020.107044},
  url = {https://www.sciencedirect.com/science/article/pii/S105579032030316X},
  author = {Mariadassou, Mahendra and Suez, Marie and Sathyakumar, Sanbandam and Vignal, Alain and Arca, Mariangela and Nicolas, Pierre and Faraut, Thomas and Esquerré, Diane and Nishibori, Masahide and Vieaud, Agathe and Chen, Chih-Feng and {Manh Pham}, Hung and Roman, Yannick and Hospital, Frédéric and Zerjal, Tatiana and Rognon, Xavier and Tixier-Boichard, Michèle},
  keywords = {Chicken genomics, Hybridization, Introgression, Domestication},
  pdf = {https://www.sciencedirect.com/science/article/pii/S105579032030316X/pdfft?md5=b12dc00280157f06a65823c9ff4eda74&pid=1-s2.0-S105579032030316X-main.pdf}
}

  17. E. Lejal, J. Chiquet, J. Aubert, S. Robin, A. Estrada-Peña, O. Rue, C. Midoux, M. Mariadassou, X. Bailly, A. Cougoul, P. Gasqui, J. F. Cosson, K. Chalvet-Monfray, M. Vayssier-Taussat, and T. Pollet. Temporal patterns in Ixodes ricinus microbial communities: an insight into tick-borne microbe interactions. Microbiome, 9(1) 2021. 
    • @article{Lejal2021,
  doi = {10.1186/s40168-021-01051-8},
  url = {https://doi.org/10.1186/s40168-021-01051-8},
  pdf = {https://microbiomejournal.biomedcentral.com/track/pdf/10.1186/s40168-021-01051-8.pdf},
  year = {2021},
  month = jul,
  publisher = {Springer Science and Business Media {LLC}},
  volume = {9},
  number = {1},
  author = {Lejal, E. and Chiquet, J. and Aubert, J. and Robin, S. and Estrada-Pe{\~{n}}a, A. and Rue, O. and Midoux, C. and Mariadassou, M. and Bailly, X. and Cougoul, A. and Gasqui, P. and Cosson, J. F. and Chalvet-Monfray, K. and Vayssier-Taussat, M. and Pollet, T.},
  title = {Temporal patterns in Ixodes ricinus microbial communities: an insight into tick-borne microbe interactions},
  journal = {Microbiome},
  month_numeric = {7}
}

  18. Marion Leclerc, Cassandre Bedu-Ferrari, Lucie Etienne Mesmin, Mahendra Mariadassou, Lucie Lebreuilly, Seav Ly Tran, Laurence Brazeau, Camille Mayeur, Julien Delmas, Olivier Rué, Sylvain Denis, Stéphanie Blanquet-Diot, and and Nalini Ramarao. Nitric Oxide impacts human gut microbiota diversity and functionalities. mSystems, 6(5) :e00558–21, 2021. 
    • @article{leclerc2021,
  title = {Nitric Oxide impacts human gut microbiota diversity and functionalities},
  journal = {mSystems},
  author = {Leclerc, Marion and Bedu-Ferrari, Cassandre and Mesmin, Lucie Etienne and Mariadassou, Mahendra and Lebreuilly, Lucie and Tran, Seav Ly and Brazeau, Laurence and Mayeur, Camille and Delmas, Julien and Rué, Olivier and Denis, Sylvain and Blanquet-Diot, Stéphanie and and Nalini Ramarao},
  year = {2021},
  doi = {10.1128/mSystems.00558-21},
  volume = {6},
  issue = {5},
  pages = {e00558-21},
  pdf = {https://journals.asm.org/doi/pdf/10.1128/mSystems.00558-21?download=true}
}

  19. Maxence Jollet, Kevin Nay, Angèle Chopard, Marie-Pierre Bareille, Arnaud Beck, Vincent Ollendorff, Barbara Vernus, Anne Bonnieu, Mahendra Mariadassou, Olivier Rué, Frédéric Derbré, Bénédicte Goustard, and Christelle Koechlin-Ramonatxo. Does Physical Inactivity Induce Significant Changes in Human Gut Microbiota? New Answers Using the Dry Immersion Hypoactivity Model. Nutrients, 13(11) 2021. 
    • @article{nu13113865,
  author = {Jollet, Maxence and Nay, Kevin and Chopard, Angèle and Bareille, Marie-Pierre and Beck, Arnaud and Ollendorff, Vincent and Vernus, Barbara and Bonnieu, Anne and Mariadassou, Mahendra and Rué, Olivier and Derbré, Frédéric and Goustard, Bénédicte and Koechlin-Ramonatxo, Christelle},
  title = {Does Physical Inactivity Induce Significant Changes in Human Gut Microbiota? New Answers Using the Dry Immersion Hypoactivity Model},
  journal = {Nutrients},
  volume = {13},
  year = {2021},
  number = {11},
  article-number = {3865},
  url = {https://www.mdpi.com/2072-6643/13/11/3865},
  issn = {2072-6643},
  doi = {10.3390/nu13113865},
  pdf = {https://www.mdpi.com/2072-6643/13/11/3865/pdf}
}

  20. Julien Chiquet, Mahendra Mariadassou, and Stephane Robin. The Poisson-lognormal model as a versatile framework for the joint analysis of species abundances. Frontiers in Ecology and Evolution, 9 :188, 2021. 
    • @article{chiquet2021,
  title = {The Poisson-lognormal model as a versatile framework for the joint analysis of species abundances},
  author = {Chiquet, Julien and Mariadassou, Mahendra and Robin, Stephane},
  volume = {9},
  pages = {188},
  year = {2021},
  url = {https://www.frontiersin.org/article/10.3389/fevo.2021.588292},
  doi = {10.3389/fevo.2021.588292},
  pdf = {https://www.frontiersin.org/articles/10.3389/fevo.2021.588292/pdf},
  journal = {Frontiers in Ecology and Evolution}
}

  21. Franciele Pereira Camargo, Isabel Kimiko Sakamoto, Tiago Palladino Delforno, Mahendra Mariadassou, Valentin Loux, Cédric Midoux, Iolanda Cristina Silveira Duarte, Edson Luiz Silva, Ariane Bize, and Maria Bernadete Amâncio Varesche. Microbial and functional characterization of an allochthonous consortium applied to hydrogen production from Citrus Peel Waste in batch reactor in optimized conditions. Journal of Environmental Management, 291 :112631, 2021. 
    • @article{CAMARGO2021112631,
  title = {Microbial and functional characterization of an allochthonous consortium applied to hydrogen production from Citrus Peel Waste in batch reactor in optimized conditions},
  journal = {Journal of Environmental Management},
  volume = {291},
  pages = {112631},
  year = {2021},
  issn = {0301-4797},
  doi = {10.1016/j.jenvman.2021.112631},
  url = {https://www.sciencedirect.com/science/article/pii/S0301479721006939},
  pdf = {https://www.sciencedirect.com/science/article/pii/S0301479721006939/pdfft?isDTMRedir=true&download=true},
  author = {Camargo, Franciele Pereira and Sakamoto, Isabel Kimiko and Delforno, Tiago Palladino and Mariadassou, Mahendra and Loux, Valentin and Midoux, Cédric and Duarte, Iolanda Cristina Silveira and Silva, Edson Luiz and Bize, Ariane and Varesche, Maria Bernadete Amâncio},
  keywords = {Rotational central composite design, Shotgun metagenomics, Carbohydrate-active enzymes, Kyoto encyclopedia of genes and genomes, KEGG Orthology database}
}

  22. Ariane Bize, Cédric Midoux, Mahendra Mariadassou, Sophie Schbath, Patrick Forterre, and Violette Da Cunha. Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history. BMC Genomics, 22(1) 2021. 
    • @article{Bize2021,
  doi = {10.1186/s12864-021-07471-y},
  url = {https://doi.org/10.1186/s12864-021-07471-y},
  pdf = {https://bmcgenomics.biomedcentral.com/track/pdf/10.1186/s12864-021-07471-y.pdf},
  year = {2021},
  month = mar,
  publisher = {Springer Science and Business Media {LLC}},
  volume = {22},
  number = {1},
  author = {Bize, Ariane and Midoux, C{\'{e}}dric and Mariadassou, Mahendra and Schbath, Sophie and Forterre, Patrick and Cunha, Violette Da},
  title = {Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history},
  hal_id = {hal-03176011},
  journal = {BMC Genomics},
  month_numeric = {3}
}

  23. Maria Bernard, Olivier Rué, Mahendra Mariadassou, and Géraldine Pascal. FROGS: a powerful tool to analyse the diversity of fungi with special management of internal transcribed spacers. Briefings in Bioinformatics, 2021. 
    • @article{FROGS2,
  author = {Bernard, Maria and Rué, Olivier and Mariadassou, Mahendra and Pascal, Géraldine},
  title = ,
  journal = {Briefings in Bioinformatics},
  year = {2021},
  month = aug,
  issn = {1477-4054},
  doi = {10.1093/bib/bbab318},
  url = {https://doi.org/10.1093/bib/bbab318},
  pdf = {https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbab318/39805849/bbab318.pdf?guestAccessKey=c3c28079-333a-432e-9d9e-b4c37da8284d},
  month_numeric = {8}
}

  24. Malik Aydin, Cornelius Weisser, Olivier Rué, Mahendra Mariadassou, Sandra Maaß, Ann-Kathrin Behrendt, Yan Jaszczyszyn, Tatje Heilker, Maximilian Spaeth, Silvia Vogel, Sören Lutz, Parviz Ahmad-Nejad, Viktoria Graf, Aliyah Bellm, Christoph Weisser, Ella A. Naumova, Wolfgang H. Arnold, Anja Ehrhardt, Almut Meyer-Bahlburg, Dörte Becher, Jan Postberg, Beniam Ghebremedhin, and Stefan Wirth. The Rhinobiome of Exacerbated Wheezers and Asthmatics: Insights From a German Pediatric Exacerbation Network. Frontiers in Allergy, 2 :11, 2021. 
    • @article{10.3389/falgy.2021.667562,
  author = {Aydin, Malik and Weisser, Cornelius and Rué, Olivier and Mariadassou, Mahendra and Maaß, Sandra and Behrendt, Ann-Kathrin and Jaszczyszyn, Yan and Heilker, Tatje and Spaeth, Maximilian and Vogel, Silvia and Lutz, Sören and Ahmad-Nejad, Parviz and Graf, Viktoria and Bellm, Aliyah and Weisser, Christoph and Naumova, Ella A. and Arnold, Wolfgang H. and Ehrhardt, Anja and Meyer-Bahlburg, Almut and Becher, Dörte and Postberg, Jan and Ghebremedhin, Beniam and Wirth, Stefan},
  title = {The Rhinobiome of Exacerbated Wheezers and Asthmatics: Insights From a German Pediatric Exacerbation Network},
  journal = {Frontiers in Allergy},
  volume = {2},
  pages = {11},
  year = {2021},
  url = {https://www.frontiersin.org/article/10.3389/falgy.2021.667562},
  doi = {10.3389/falgy.2021.667562},
  issn = {2673-6101},
  pdf = {https://www.frontiersin.org/articles/10.3389/falgy.2021.667562/pdf}
}

  25. Zahra Safari, Aurélia Bruneau, Magali Monnoye, Mahendra Mariadassou, Catherine Philippe, Kurt Zatloukal, and Philippe Gérard. Murine Genetic Background Overcomes Gut Microbiota Changes to Explain Metabolic Response to High-Fat Diet. Nutrients, 12 :287, 2020. 
    • @article{Safari2020,
  author = {Safari, Zahra and Bruneau, Aurélia and Monnoye, Magali and Mariadassou, Mahendra and Philippe, Catherine and Zatloukal, Kurt and Gérard, Philippe},
  title = {Murine Genetic Background Overcomes Gut Microbiota Changes to Explain Metabolic Response to High-Fat Diet},
  journal = {Nutrients},
  year = {2020},
  doi = {https://doi.org/10.3390/nu12020287},
  url = {https://www.mdpi.com/2072-6643/12/2/287/htm},
  pdf = {https://www.mdpi.com/2072-6643/12/2/287/pdf},
  volume = {12},
  pages = {287}
}

  26. Laurent Naudon, Adrien François, Mahendra Mariadassou, Magali Monnoye, Catherine Philippe, Aurélia Bruneau, Marie Dussauze, Olivier Rué, Sylvie Rabot, and Nicolas Meunier. First step of odorant detection in the olfactory epithelium and olfactory preferences differ according to the microbiota profile in mice. Behavioural Brain Research, 384 :112549, 2020. 
    • @article{Naudon2020,
  title = {First step of odorant detection in the olfactory epithelium and olfactory preferences differ according to the microbiota profile in mice},
  journal = {Behavioural Brain Research},
  volume = {384},
  pages = {112549},
  year = {2020},
  issn = {0166-4328},
  doi = {https://doi.org/10.1016/j.bbr.2020.112549},
  url = {http://www.sciencedirect.com/science/article/pii/S0166432819314950},
  pdf = {https://www.sciencedirect.com/science/article/pii/S0166432819314950/pdfft?md5=b6f53e61c9d0b52087b7e9f410ca7d66&pid=1-s2.0-S0166432819314950-main.pdf},
  author = {Naudon, Laurent and François, Adrien and Mariadassou, Mahendra and Monnoye, Magali and Philippe, Catherine and Bruneau, Aurélia and Dussauze, Marie and Rué, Olivier and Rabot, Sylvie and Meunier, Nicolas},
  keywords = {Olfaction, Microbiota, Olfactory epithelium}
}

  27. Mahendra Mariadassou and Timothée Tabouy. Consistency and Asymptotic Normality of Stochastic Block Models Estimators from Sampled Data. Electronic Journal of Statistics, 14(2) :3672–3704, 2020. 
    • @article{mariadassou2019consistency,
  title = {Consistency and Asymptotic Normality of Stochastic Block Models Estimators from Sampled Data},
  author = {Mariadassou, Mahendra and Tabouy, Timoth{\'e}e},
  volume = {14},
  pages = {3672--3704},
  number = {2},
  journal = {Electronic Journal of Statistics},
  doi = {10.1214/20-EJS1750},
  url = {https://projecteuclid.org/euclid.ejs/1601949675},
  pdf = {https://projecteuclid.org/download/pdfview_1/euclid.ejs/1601949675},
  year = {2020}
}

  28. Mahendra Mariadassou, Yuliaxis Ramayo-Caldas, Mathieu Charles, Maureen Fémenia, Gilles Renand, and Dominique Rocha. Detection of selection signatures in Limousin cattle using whole-genome resequencing. Animal Genetics, 2020. 
    • @article{Mariadassou2020,
  author = {Mariadassou, Mahendra and Ramayo-Caldas, Yuliaxis and Charles, Mathieu and Fémenia, Maureen and Renand, Gilles and Rocha, Dominique},
  title = {Detection of selection signatures in Limousin cattle using whole-genome resequencing},
  journal = {Animal Genetics},
  year = {2020},
  volume = {},
  number = {},
  pages = {},
  keywords = {Limousin breed, polymorphisms, signature of selection, whole-genome resequencing},
  doi = {10.1111/age.12982},
  url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/age.12982},
  pdf = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/age.12982}
}

  29. Emilie Lejal, Estrada-Peña Agustı́n, Maud Marsot, Jean-François Cosson, Olivier Rué, Mahendra Mariadassou, Cédric Midoux, Muriel Vayssier-Taussat, and Thomas Pollet. Taxon appearance from extraction and amplification steps demonstrates the value of multiple controls in tick microbiome analysis. Frontiers in Microbiology, 11 :1093, 2020. 
    • @article{Lejal2020,
  author = {Lejal, Emilie and Estrada-Pe{\~n}a, Agust{\'\i}n and Marsot, Maud and Cosson, Jean-Fran{\c c}ois and Ru{\'e}, Olivier and Mariadassou, Mahendra and Midoux, C{\'e}dric and Vayssier-Taussat, Muriel and Pollet, Thomas},
  title = {Taxon appearance from extraction and amplification steps demonstrates the value of multiple controls in tick microbiome analysis},
  elocation-id = {714030},
  year = {2020},
  volume = {11},
  pages = {1093},
  doi = {10.3389/fmicb.2020.01093},
  url = {https://www.frontiersin.org/articles/10.3389/fmicb.2020.01093},
  pdf = {https://www.frontiersin.org/articles/10.3389/fmicb.2020.01093/pdf},
  journal = {Frontiers in Microbiology},
  issn = {1664-302X}
}

  30. Valérie Marie Daugé, Catherine Philippe, Mahendra Mariadassou, Olivier Rué, Jean-Charles Martin, Marie-Noelle Rossignol, Nathalie Dourmap, Ljubica Svilar, Franck Tourniaire, Magali Monnoye, Deborah Jardet, Marie Bangratz, Sophie Holowacz, Sylvie Rabot, and Laurent Naudon. A probiotic mixture induces anxiolytic-and antidepressive-like effects in Fischer and maternally deprived Long Evans rats. Frontiers in Behavioral Neuroscience, 14 :214, 2020. 
    • @article{dauge2020,
  title = {A probiotic mixture induces anxiolytic-and antidepressive-like effects in Fischer and maternally deprived Long Evans rats},
  author = {Daugé, Valérie Marie and Philippe, Catherine and Mariadassou, Mahendra and Rué, Olivier and Martin, Jean-Charles and Rossignol, Marie-Noelle and Dourmap, Nathalie and Svilar, Ljubica and Tourniaire, Franck and Monnoye, Magali and Jardet, Deborah and Bangratz, Marie and Holowacz, Sophie and Rabot, Sylvie and Naudon, Laurent},
  journal = {Frontiers in Behavioral Neuroscience},
  volume = {14},
  pages = {214},
  year = {2020},
  url = {https://www.frontiersin.org/article/10.3389/fnbeh.2020.581296},
  doi = {10.3389/fnbeh.2020.581296},
  issn = {1662-5153},
  pdf = {https://www.frontiersin.org/article/10.3389/fnbeh.2020.581296/pdf}
}

  31. Fanny Canon, Mahendra Mariadassou, Marie-Bernadette Maillard, Hélène Falentin, Sandrine Parayre, Marie-Noëlle Madec, Florence Valence, Gwénaële Henry, Valérie Laroute, Marie-Line Daveran-Mingot, Muriel Cocaign-Bousquet, Anne Thierry, and Valérie Gagnaire. Function-driven design of lactic acid bacteria co-cultures to produce new fermented food associating milk and lupin. Frontiers in Microbiology, 11 :2850, 2020. 
    • @article{Canon2020,
  author = {Canon, Fanny and Mariadassou, Mahendra and Maillard, Marie-Bernadette and Falentin, Hélène and Parayre, Sandrine and Madec, Marie-Noëlle and Valence, Florence and Henry, Gwénaële and Laroute, Valérie and Daveran-Mingot, Marie-Line and Cocaign-Bousquet, Muriel and Thierry, Anne and Gagnaire, Valérie},
  title = {Function-driven design of lactic acid bacteria co-cultures to produce new fermented food associating milk and lupin},
  year = {2020},
  journal = {Frontiers in Microbiology},
  doi = {10.3389/fmicb.2020.584163},
  url = {https://www.frontiersin.org/articles/10.3389/fmicb.2020.584163},
  pdf = {https://www.frontiersin.org/articles/10.3389/fmicb.2020.584163/pdf},
  volume = {11},
  pages = {2850},
  issn = {1664-302X}
}

  32. Vincent Brault, Christine Keribin, and Mahendra Mariadassou. Consistency and Asymptotic Normality of Latent Blocks Model Estimators. Electron. J. Statist., 14(1) :1234–1268, 2020. 
    • @article{Brault2020,
  title = ,
  author = {Brault, Vincent and Keribin, Christine and Mariadassou, Mahendra},
  url = {https://hal.archives-ouvertes.fr/hal-01511960},
  journal = {Electron. J. Statist.},
  fjournal = {Electronic Journal of Statistics},
  year = {2020},
  volume = {14},
  number = {1},
  pages = {1234-1268},
  issn = {1935-7524},
  doi = {10.1214/20-EJS1695},
  sici = {1935-7524(2020)14:1<1234:CAANOL>2.0.CO;2-7},
  keywords = {Latent Block Model ; asymptotic normality ; Maximum Likelihood Estimate ; Concentration Inequality},
  pdf = {https://hal.archives-ouvertes.fr/hal-01511960/file/bj-BraultKeribinMariadassou.pdf},
  hal_id = {hal-01511960},
  hal_version = {v1}
}

  33. Antoine Bichat, Jonathan Plassais, Christophe Ambroise, and Mahendra Mariadassou. Incorporating phylogenetic information in microbiome abundance studies has no effect on detection power and FDR control. Frontiers in Microbiology, 11 :649, 2020. 
    • @article{Bichat2020,
  title = {Incorporating phylogenetic information in microbiome abundance studies has no effect on detection power and FDR control},
  author = {Bichat, Antoine and Plassais, Jonathan and Ambroise, Christophe and Mariadassou, Mahendra},
  year = {2020},
  volume = {11},
  pages = {649},
  url = {https://www.frontiersin.org/article/10.3389/fmicb.2020.00649},
  issn = {1664-302X},
  doi = {10.3389/fmicb.2020.00649},
  pdf = {https://www.frontiersin.org/articles/10.3389/fmicb.2020.00649/pdf},
  journal = {Frontiers in Microbiology}
}


  1. Maxence Jollet, Mahendra Mariadassou, Olivier Rué, Laurence Pessemesse, Vincent Ollendorff, Sofiane Ramdani, Barbara Vernus, Anne Bonnieu, Christelle Bertrand-Gaday, Bénédicte Goustard, and Christelle Koechlin-Ramonatxo. Insight into the Role of Gut Microbiota in Duchenne Muscular Dystrophy: An Age-Related Study in Mdx Mice. The American Journal of Pathology, 194(2) :264–279, 2024. 
    • @article{Jollet2024,
  author = {Jollet, Maxence and Mariadassou, Mahendra and Rué, Olivier and Pessemesse, Laurence and Ollendorff, Vincent and Ramdani, Sofiane and Vernus, Barbara and Bonnieu, Anne and Bertrand-Gaday, Christelle and Goustard, Bénédicte and Koechlin-Ramonatxo, Christelle},
  title = {Insight into the Role of Gut Microbiota in Duchenne Muscular Dystrophy: An Age-Related Study in Mdx Mice},
  journal = {The American Journal of Pathology},
  year = {2024},
  volume = {194},
  number = {2},
  pages = {264-279},
  issn = {0002-9440},
  doi = {10.1016/j.ajpath.2023.10.010},
  url = {https://www.sciencedirect.com/science/article/pii/S0002944023004200},
  pdf = {https://www.sciencedirect.com/science/article/pii/S0002944023004200/pdfft?md5=3d45639d27f7dd29c311aaa2f1f39951&pid=1-s2.0-S0002944023004200-main.pdf}
}

  2. Anne Thierry, Marie-Noelle Madec, Victoria Chuat, Anne-Sophie Bage, Olivier Picard, Cécile Grondin, Olivier Rué, Mahendra Mariadassou, Laurent Marché, and Florence Valence. Microbial communities of a variety of 75 homemade fermented vegetables. Frontiers in Microbiology, 14 2023. 
    • @article{Thierry2023,
  author = {Thierry, Anne and Madec, Marie-Noelle and Chuat, Victoria and Bage, Anne-Sophie and Picard, Olivier and Grondin, Cécile and Rué, Olivier and Mariadassou, Mahendra and Marché, Laurent and Valence, Florence},
  title = {Microbial communities of a variety of 75 homemade fermented vegetables},
  journal = {Frontiers in Microbiology},
  year = {2023},
  volume = {14},
  issn = {1664-302X},
  doi = {10.3389/fmicb.2023.1323424},
  url = {https://www.frontiersin.org/articles/10.3389/fmicb.2023.1323424},
  pdf = {https://www.frontiersin.org/articles/10.3389/fmicb.2023.1323424/pdf?isPublishedV2=False}
}

  3. Mahendra Mariadassou, Laurent X Nouvel, Fabienne Constant, Diego P Morgavi, Lucie Rault, Sarah Barbey, Emmanuelle Helloin, Olivier Rué, Sophie Schbath, Frederic Launay, Olivier Sandra, Rachel Lefebvre, Yves Le Loir, Pierre Germon, Christine Citti, and Sergine Even. Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd. Animal Microbiome, 5(1) :1–17, 2023. 
    • @article{mariadassou2023microbiota,
  title = {Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd},
  author = {Mariadassou, Mahendra and Nouvel, Laurent X and Constant, Fabienne and Morgavi, Diego P and Rault, Lucie and Barbey, Sarah and Helloin, Emmanuelle and Rué, Olivier and Schbath, Sophie and Launay, Frederic and Sandra, Olivier and Lefebvre, Rachel and Le Loir, Yves and Germon, Pierre and Citti, Christine and Even, Sergine},
  journal = {Animal Microbiome},
  volume = {5},
  number = {1},
  pages = {1--17},
  year = {2023},
  doi = {10.1186/s42523-023-00252-w},
  url = {https://doi.org/10.1186/s42523-023-00252-w},
  pdf = {https://animalmicrobiome.biomedcentral.com/counter/pdf/10.1186/s42523-023-00252-w.pdf},
  publisher = {BioMed Central}
}

  4. Semi Zouiouich, Mahendra Mariadassou, Olivier Rué, Emily Vogtmann, Inge Huybrechts, Gianluca Severi, Marie-Christine Boutron-Ruault, Carlo Senore, Alessio Naccarati, Giulio Mengozzi, Zisis Kozlakidis, Mazda Jenab, Rashmi Sinha, Marc J. Gunter, and Marion Leclerc. Comparison of Fecal Sample Collection Methods for Microbial Analysis Embedded within Colorectal Cancer Screening Programs. Cancer Epidemiology, Biomarkers & Prevention, 31(2) :305–314, 2022. 
    • @article{10.1158/1055-9965.EPI-21-0188,
  author = {Zouiouich, Semi and Mariadassou, Mahendra and Rué, Olivier and Vogtmann, Emily and Huybrechts, Inge and Severi, Gianluca and Boutron-Ruault, Marie-Christine and Senore, Carlo and Naccarati, Alessio and Mengozzi, Giulio and Kozlakidis, Zisis and Jenab, Mazda and Sinha, Rashmi and Gunter, Marc J. and Leclerc, Marion},
  title = ,
  journal = {Cancer Epidemiology, Biomarkers & Prevention},
  volume = {31},
  number = {2},
  pages = {305-314},
  year = {2022},
  month = feb,
  issn = {1055-9965},
  doi = {10.1158/1055-9965.EPI-21-0188},
  url = {https://doi.org/10.1158/1055-9965.EPI-21-0188},
  pdf = {https://aacrjournals.org/cebp/article-pdf/31/2/305/3035218/305.pdf},
  month_numeric = {2}
}

  5. Amandine Selle, Carole Brosseau, Angéline Duval, Grégory Bouchaud, Anais Rousseaux, Aurélia Bruneau, Claire Cherbuy, Mahendra Mariadassou, Véronique Cariou, Sebastien Barbarot, and Marie Bodinier. Food allergy prevention in progeny by prebiotic supplementation during pregnancy in a preclinical study. Frontiers in Immunology, 12 :4832, 2022. 
    • @article{Selle2021,
  title = {Food allergy prevention in progeny by prebiotic supplementation during pregnancy in a preclinical study},
  author = {Selle, Amandine and Brosseau, Carole and Duval, Angéline and Bouchaud, Grégory and Rousseaux, Anais and Bruneau, Aurélia and Cherbuy, Claire and Mariadassou, Mahendra and Cariou, Véronique and Barbarot, Sebastien and Bodinier, Marie},
  journal = {Frontiers in Immunology},
  volume = {12},
  pages = {4832},
  year = {2022},
  url = {https://www.frontiersin.org/article/10.3389/fimmu.2021.745535},
  doi = {10.3389/fimmu.2021.745535},
  pdf = {https://www.frontiersin.org/articles/10.3389/fimmu.2021.745535/pdf}
}

  6. Vuong Quoc Hoang Ngo, François Enault, Cédric Midoux, Mahendra Mariadassou, Olivier Chapleur, Laurent Mazéas, Valentin Loux, Théodore Bouchez, Mart Krupovic, and Ariane Bize. Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics. Environmental Microbiology, 24(10) :4853–4868, 2022. 
    • @article{Ngo2022,
  author = {Ngo, Vuong Quoc Hoang and Enault, François and Midoux, Cédric and Mariadassou, Mahendra and Chapleur, Olivier and Mazéas, Laurent and Loux, Valentin and Bouchez, Théodore and Krupovic, Mart and Bize, Ariane},
  title = {Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics},
  journal = {Environmental Microbiology},
  volume = {24},
  number = {10},
  pages = {4853--4868},
  year = {2022},
  publisher = {Wiley},
  month = jul,
  doi = {https://doi.org/10.1111/1462-2920.16120},
  url = {https://sfamjournals.onlinelibrary.wiley.com/doi/abs/10.1111/1462-2920.16120},
  eprint = {https://sfamjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/1462-2920.16120},
  pdf = {https://sfamjournals.onlinelibrary.wiley.com/doi/epdf/10.1111/1462-2920.16120},
  month_numeric = {7}
}

  7. Antoine Bichat, Christophe Ambroise, and Mahendra Mariadassou. Hierarchical correction of p-values via an ultrametric tree running Ornstein-Uhlenbeck process. Computational Statistics, 37(3) :995–1013, 2022. 
    • @article{bichat2022hierarchical,
  title = {Hierarchical correction of p-values via an ultrametric tree running Ornstein-Uhlenbeck process},
  author = {Bichat, Antoine and Ambroise, Christophe and Mariadassou, Mahendra},
  journal = {Computational Statistics},
  volume = {37},
  number = {3},
  pages = {995--1013},
  year = {2022},
  publisher = {Springer},
  url = {http://link.springer.com/article/10.1007/s00180-021-01148-6},
  doi = {10.1007/s00180-021-01148-6},
  pdf = {https://link.springer.com/content/pdf/10.1007/s00180-021-01148-6.pdf}
}

  8. Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems. eLife, 11 :e78129, 2022. 
    • @article{Richter2022,
  title = {Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems},
  author = {},
  volume = {11},
  year = {2022},
  month = aug,
  pub_date = {2022-08-03},
  pages = {e78129},
  citation = {eLife 2022;11:e78129},
  doi = {10.7554/eLife.78129},
  url = {https://doi.org/10.7554/eLife.78129},
  journal = {eLife},
  issn = {2050-084X},
  pdf = {https://elifesciences.org/download/aHR0cHM6Ly9jZG4uZWxpZmVzY2llbmNlcy5vcmcvYXJ0aWNsZXMvNzgxMjkvZWxpZmUtNzgxMjktdjEucGRmP2Nhbm9uaWNhbFVyaT1odHRwczovL2VsaWZlc2NpZW5jZXMub3JnL2FydGljbGVzLzc4MTI5/elife-78129-v1.pdf?_hash=84cJGQ8IyGlmYH01ZvsbITElPXHN6qOAs3LCEKQkWOk%3D},
  month_numeric = {8}
}

  9. Xufei Zhang, Magali Monnoye, Mahendra Mariadassou, Fabienne Beguet-Crespel, Nicolas Lapaque, Christine Heberden, and Veronique Douard. Glucose but not fructose alters the intestinal paracellular permeability in association with gut inflammation and dysbiosis in mice. Frontiers in Immunology, 12 :4479, 2021. 
    • @article{Zhang2021,
  title = {Glucose but not fructose alters the  intestinal paracellular permeability in association with gut inflammation and dysbiosis in mice},
  author = {Zhang, Xufei and Monnoye, Magali and Mariadassou, Mahendra and Beguet-Crespel, Fabienne and Lapaque, Nicolas and Heberden, Christine and Douard, Veronique},
  year = {2021},
  journal = {Frontiers in Immunology},
  url = {https://www.frontiersin.org/article/10.3389/fimmu.2021.742584},
  doi = {10.3389/fimmu.2021.742584},
  volume = {12},
  pages = {4479},
  pdf = {https://www.frontiersin.org/articles/10.3389/fimmu.2021.742584/pdf}
}

  10. Mahendra Mariadassou, Marie Suez, Sanbandam Sathyakumar, Alain Vignal, Mariangela Arca, Pierre Nicolas, Thomas Faraut, Diane Esquerré, Masahide Nishibori, Agathe Vieaud, Chih-Feng Chen, Hung Manh Pham, Yannick Roman, Frédéric Hospital, Tatiana Zerjal, Xavier Rognon, and Michèle Tixier-Boichard. Unraveling the history of the genus Gallus through whole genome sequencing. Molecular Phylogenetics and Evolution, 158 :107044, 2021. 
    • @article{Mariadassou2021,
  title = {Unraveling the history of the genus Gallus through whole genome sequencing},
  journal = {Molecular Phylogenetics and Evolution},
  volume = {158},
  pages = {107044},
  year = {2021},
  issn = {1055-7903},
  doi = {https://doi.org/10.1016/j.ympev.2020.107044},
  url = {https://www.sciencedirect.com/science/article/pii/S105579032030316X},
  author = {Mariadassou, Mahendra and Suez, Marie and Sathyakumar, Sanbandam and Vignal, Alain and Arca, Mariangela and Nicolas, Pierre and Faraut, Thomas and Esquerré, Diane and Nishibori, Masahide and Vieaud, Agathe and Chen, Chih-Feng and {Manh Pham}, Hung and Roman, Yannick and Hospital, Frédéric and Zerjal, Tatiana and Rognon, Xavier and Tixier-Boichard, Michèle},
  keywords = {Chicken genomics, Hybridization, Introgression, Domestication},
  pdf = {https://www.sciencedirect.com/science/article/pii/S105579032030316X/pdfft?md5=b12dc00280157f06a65823c9ff4eda74&pid=1-s2.0-S105579032030316X-main.pdf}
}

  11. E. Lejal, J. Chiquet, J. Aubert, S. Robin, A. Estrada-Peña, O. Rue, C. Midoux, M. Mariadassou, X. Bailly, A. Cougoul, P. Gasqui, J. F. Cosson, K. Chalvet-Monfray, M. Vayssier-Taussat, and T. Pollet. Temporal patterns in Ixodes ricinus microbial communities: an insight into tick-borne microbe interactions. Microbiome, 9(1) 2021. 
    • @article{Lejal2021,
  doi = {10.1186/s40168-021-01051-8},
  url = {https://doi.org/10.1186/s40168-021-01051-8},
  pdf = {https://microbiomejournal.biomedcentral.com/track/pdf/10.1186/s40168-021-01051-8.pdf},
  year = {2021},
  month = jul,
  publisher = {Springer Science and Business Media {LLC}},
  volume = {9},
  number = {1},
  author = {Lejal, E. and Chiquet, J. and Aubert, J. and Robin, S. and Estrada-Pe{\~{n}}a, A. and Rue, O. and Midoux, C. and Mariadassou, M. and Bailly, X. and Cougoul, A. and Gasqui, P. and Cosson, J. F. and Chalvet-Monfray, K. and Vayssier-Taussat, M. and Pollet, T.},
  title = {Temporal patterns in Ixodes ricinus microbial communities: an insight into tick-borne microbe interactions},
  journal = {Microbiome},
  month_numeric = {7}
}

  12. Marion Leclerc, Cassandre Bedu-Ferrari, Lucie Etienne Mesmin, Mahendra Mariadassou, Lucie Lebreuilly, Seav Ly Tran, Laurence Brazeau, Camille Mayeur, Julien Delmas, Olivier Rué, Sylvain Denis, Stéphanie Blanquet-Diot, and and Nalini Ramarao. Nitric Oxide impacts human gut microbiota diversity and functionalities. mSystems, 6(5) :e00558–21, 2021. 
    • @article{leclerc2021,
  title = {Nitric Oxide impacts human gut microbiota diversity and functionalities},
  journal = {mSystems},
  author = {Leclerc, Marion and Bedu-Ferrari, Cassandre and Mesmin, Lucie Etienne and Mariadassou, Mahendra and Lebreuilly, Lucie and Tran, Seav Ly and Brazeau, Laurence and Mayeur, Camille and Delmas, Julien and Rué, Olivier and Denis, Sylvain and Blanquet-Diot, Stéphanie and and Nalini Ramarao},
  year = {2021},
  doi = {10.1128/mSystems.00558-21},
  volume = {6},
  issue = {5},
  pages = {e00558-21},
  pdf = {https://journals.asm.org/doi/pdf/10.1128/mSystems.00558-21?download=true}
}

  13. Maxence Jollet, Kevin Nay, Angèle Chopard, Marie-Pierre Bareille, Arnaud Beck, Vincent Ollendorff, Barbara Vernus, Anne Bonnieu, Mahendra Mariadassou, Olivier Rué, Frédéric Derbré, Bénédicte Goustard, and Christelle Koechlin-Ramonatxo. Does Physical Inactivity Induce Significant Changes in Human Gut Microbiota? New Answers Using the Dry Immersion Hypoactivity Model. Nutrients, 13(11) 2021. 
    • @article{nu13113865,
  author = {Jollet, Maxence and Nay, Kevin and Chopard, Angèle and Bareille, Marie-Pierre and Beck, Arnaud and Ollendorff, Vincent and Vernus, Barbara and Bonnieu, Anne and Mariadassou, Mahendra and Rué, Olivier and Derbré, Frédéric and Goustard, Bénédicte and Koechlin-Ramonatxo, Christelle},
  title = {Does Physical Inactivity Induce Significant Changes in Human Gut Microbiota? New Answers Using the Dry Immersion Hypoactivity Model},
  journal = {Nutrients},
  volume = {13},
  year = {2021},
  number = {11},
  article-number = {3865},
  url = {https://www.mdpi.com/2072-6643/13/11/3865},
  issn = {2072-6643},
  doi = {10.3390/nu13113865},
  pdf = {https://www.mdpi.com/2072-6643/13/11/3865/pdf}
}

  14. Julien Chiquet, Mahendra Mariadassou, and Stephane Robin. The Poisson-lognormal model as a versatile framework for the joint analysis of species abundances. Frontiers in Ecology and Evolution, 9 :188, 2021. 
    • @article{chiquet2021,
  title = {The Poisson-lognormal model as a versatile framework for the joint analysis of species abundances},
  author = {Chiquet, Julien and Mariadassou, Mahendra and Robin, Stephane},
  volume = {9},
  pages = {188},
  year = {2021},
  url = {https://www.frontiersin.org/article/10.3389/fevo.2021.588292},
  doi = {10.3389/fevo.2021.588292},
  pdf = {https://www.frontiersin.org/articles/10.3389/fevo.2021.588292/pdf},
  journal = {Frontiers in Ecology and Evolution}
}

  15. Franciele Pereira Camargo, Isabel Kimiko Sakamoto, Tiago Palladino Delforno, Mahendra Mariadassou, Valentin Loux, Cédric Midoux, Iolanda Cristina Silveira Duarte, Edson Luiz Silva, Ariane Bize, and Maria Bernadete Amâncio Varesche. Microbial and functional characterization of an allochthonous consortium applied to hydrogen production from Citrus Peel Waste in batch reactor in optimized conditions. Journal of Environmental Management, 291 :112631, 2021. 
    • @article{CAMARGO2021112631,
  title = {Microbial and functional characterization of an allochthonous consortium applied to hydrogen production from Citrus Peel Waste in batch reactor in optimized conditions},
  journal = {Journal of Environmental Management},
  volume = {291},
  pages = {112631},
  year = {2021},
  issn = {0301-4797},
  doi = {10.1016/j.jenvman.2021.112631},
  url = {https://www.sciencedirect.com/science/article/pii/S0301479721006939},
  pdf = {https://www.sciencedirect.com/science/article/pii/S0301479721006939/pdfft?isDTMRedir=true&download=true},
  author = {Camargo, Franciele Pereira and Sakamoto, Isabel Kimiko and Delforno, Tiago Palladino and Mariadassou, Mahendra and Loux, Valentin and Midoux, Cédric and Duarte, Iolanda Cristina Silveira and Silva, Edson Luiz and Bize, Ariane and Varesche, Maria Bernadete Amâncio},
  keywords = {Rotational central composite design, Shotgun metagenomics, Carbohydrate-active enzymes, Kyoto encyclopedia of genes and genomes, KEGG Orthology database}
}

  16. Ariane Bize, Cédric Midoux, Mahendra Mariadassou, Sophie Schbath, Patrick Forterre, and Violette Da Cunha. Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history. BMC Genomics, 22(1) 2021. 
    • @article{Bize2021,
  doi = {10.1186/s12864-021-07471-y},
  url = {https://doi.org/10.1186/s12864-021-07471-y},
  pdf = {https://bmcgenomics.biomedcentral.com/track/pdf/10.1186/s12864-021-07471-y.pdf},
  year = {2021},
  month = mar,
  publisher = {Springer Science and Business Media {LLC}},
  volume = {22},
  number = {1},
  author = {Bize, Ariane and Midoux, C{\'{e}}dric and Mariadassou, Mahendra and Schbath, Sophie and Forterre, Patrick and Cunha, Violette Da},
  title = {Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history},
  hal_id = {hal-03176011},
  journal = {BMC Genomics},
  month_numeric = {3}
}

  17. Maria Bernard, Olivier Rué, Mahendra Mariadassou, and Géraldine Pascal. FROGS: a powerful tool to analyse the diversity of fungi with special management of internal transcribed spacers. Briefings in Bioinformatics, 2021. 
    • @article{FROGS2,
  author = {Bernard, Maria and Rué, Olivier and Mariadassou, Mahendra and Pascal, Géraldine},
  title = ,
  journal = {Briefings in Bioinformatics},
  year = {2021},
  month = aug,
  issn = {1477-4054},
  doi = {10.1093/bib/bbab318},
  url = {https://doi.org/10.1093/bib/bbab318},
  pdf = {https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbab318/39805849/bbab318.pdf?guestAccessKey=c3c28079-333a-432e-9d9e-b4c37da8284d},
  month_numeric = {8}
}

  18. Malik Aydin, Cornelius Weisser, Olivier Rué, Mahendra Mariadassou, Sandra Maaß, Ann-Kathrin Behrendt, Yan Jaszczyszyn, Tatje Heilker, Maximilian Spaeth, Silvia Vogel, Sören Lutz, Parviz Ahmad-Nejad, Viktoria Graf, Aliyah Bellm, Christoph Weisser, Ella A. Naumova, Wolfgang H. Arnold, Anja Ehrhardt, Almut Meyer-Bahlburg, Dörte Becher, Jan Postberg, Beniam Ghebremedhin, and Stefan Wirth. The Rhinobiome of Exacerbated Wheezers and Asthmatics: Insights From a German Pediatric Exacerbation Network. Frontiers in Allergy, 2 :11, 2021. 
    • @article{10.3389/falgy.2021.667562,
  author = {Aydin, Malik and Weisser, Cornelius and Rué, Olivier and Mariadassou, Mahendra and Maaß, Sandra and Behrendt, Ann-Kathrin and Jaszczyszyn, Yan and Heilker, Tatje and Spaeth, Maximilian and Vogel, Silvia and Lutz, Sören and Ahmad-Nejad, Parviz and Graf, Viktoria and Bellm, Aliyah and Weisser, Christoph and Naumova, Ella A. and Arnold, Wolfgang H. and Ehrhardt, Anja and Meyer-Bahlburg, Almut and Becher, Dörte and Postberg, Jan and Ghebremedhin, Beniam and Wirth, Stefan},
  title = {The Rhinobiome of Exacerbated Wheezers and Asthmatics: Insights From a German Pediatric Exacerbation Network},
  journal = {Frontiers in Allergy},
  volume = {2},
  pages = {11},
  year = {2021},
  url = {https://www.frontiersin.org/article/10.3389/falgy.2021.667562},
  doi = {10.3389/falgy.2021.667562},
  issn = {2673-6101},
  pdf = {https://www.frontiersin.org/articles/10.3389/falgy.2021.667562/pdf}
}

  19. Zahra Safari, Aurélia Bruneau, Magali Monnoye, Mahendra Mariadassou, Catherine Philippe, Kurt Zatloukal, and Philippe Gérard. Murine Genetic Background Overcomes Gut Microbiota Changes to Explain Metabolic Response to High-Fat Diet. Nutrients, 12 :287, 2020. 
    • @article{Safari2020,
  author = {Safari, Zahra and Bruneau, Aurélia and Monnoye, Magali and Mariadassou, Mahendra and Philippe, Catherine and Zatloukal, Kurt and Gérard, Philippe},
  title = {Murine Genetic Background Overcomes Gut Microbiota Changes to Explain Metabolic Response to High-Fat Diet},
  journal = {Nutrients},
  year = {2020},
  doi = {https://doi.org/10.3390/nu12020287},
  url = {https://www.mdpi.com/2072-6643/12/2/287/htm},
  pdf = {https://www.mdpi.com/2072-6643/12/2/287/pdf},
  volume = {12},
  pages = {287}
}

  20. Laurent Naudon, Adrien François, Mahendra Mariadassou, Magali Monnoye, Catherine Philippe, Aurélia Bruneau, Marie Dussauze, Olivier Rué, Sylvie Rabot, and Nicolas Meunier. First step of odorant detection in the olfactory epithelium and olfactory preferences differ according to the microbiota profile in mice. Behavioural Brain Research, 384 :112549, 2020. 
    • @article{Naudon2020,
  title = {First step of odorant detection in the olfactory epithelium and olfactory preferences differ according to the microbiota profile in mice},
  journal = {Behavioural Brain Research},
  volume = {384},
  pages = {112549},
  year = {2020},
  issn = {0166-4328},
  doi = {https://doi.org/10.1016/j.bbr.2020.112549},
  url = {http://www.sciencedirect.com/science/article/pii/S0166432819314950},
  pdf = {https://www.sciencedirect.com/science/article/pii/S0166432819314950/pdfft?md5=b6f53e61c9d0b52087b7e9f410ca7d66&pid=1-s2.0-S0166432819314950-main.pdf},
  author = {Naudon, Laurent and François, Adrien and Mariadassou, Mahendra and Monnoye, Magali and Philippe, Catherine and Bruneau, Aurélia and Dussauze, Marie and Rué, Olivier and Rabot, Sylvie and Meunier, Nicolas},
  keywords = {Olfaction, Microbiota, Olfactory epithelium}
}

  21. Mahendra Mariadassou and Timothée Tabouy. Consistency and Asymptotic Normality of Stochastic Block Models Estimators from Sampled Data. Electronic Journal of Statistics, 14(2) :3672–3704, 2020. 
    • @article{mariadassou2019consistency,
  title = {Consistency and Asymptotic Normality of Stochastic Block Models Estimators from Sampled Data},
  author = {Mariadassou, Mahendra and Tabouy, Timoth{\'e}e},
  volume = {14},
  pages = {3672--3704},
  number = {2},
  journal = {Electronic Journal of Statistics},
  doi = {10.1214/20-EJS1750},
  url = {https://projecteuclid.org/euclid.ejs/1601949675},
  pdf = {https://projecteuclid.org/download/pdfview_1/euclid.ejs/1601949675},
  year = {2020}
}

  22. Mahendra Mariadassou, Yuliaxis Ramayo-Caldas, Mathieu Charles, Maureen Fémenia, Gilles Renand, and Dominique Rocha. Detection of selection signatures in Limousin cattle using whole-genome resequencing. Animal Genetics, 2020. 
    • @article{Mariadassou2020,
  author = {Mariadassou, Mahendra and Ramayo-Caldas, Yuliaxis and Charles, Mathieu and Fémenia, Maureen and Renand, Gilles and Rocha, Dominique},
  title = {Detection of selection signatures in Limousin cattle using whole-genome resequencing},
  journal = {Animal Genetics},
  year = {2020},
  volume = {},
  number = {},
  pages = {},
  keywords = {Limousin breed, polymorphisms, signature of selection, whole-genome resequencing},
  doi = {10.1111/age.12982},
  url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/age.12982},
  pdf = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/age.12982}
}

  23. Emilie Lejal, Estrada-Peña Agustı́n, Maud Marsot, Jean-François Cosson, Olivier Rué, Mahendra Mariadassou, Cédric Midoux, Muriel Vayssier-Taussat, and Thomas Pollet. Taxon appearance from extraction and amplification steps demonstrates the value of multiple controls in tick microbiome analysis. Frontiers in Microbiology, 11 :1093, 2020. 
    • @article{Lejal2020,
  author = {Lejal, Emilie and Estrada-Pe{\~n}a, Agust{\'\i}n and Marsot, Maud and Cosson, Jean-Fran{\c c}ois and Ru{\'e}, Olivier and Mariadassou, Mahendra and Midoux, C{\'e}dric and Vayssier-Taussat, Muriel and Pollet, Thomas},
  title = {Taxon appearance from extraction and amplification steps demonstrates the value of multiple controls in tick microbiome analysis},
  elocation-id = {714030},
  year = {2020},
  volume = {11},
  pages = {1093},
  doi = {10.3389/fmicb.2020.01093},
  url = {https://www.frontiersin.org/articles/10.3389/fmicb.2020.01093},
  pdf = {https://www.frontiersin.org/articles/10.3389/fmicb.2020.01093/pdf},
  journal = {Frontiers in Microbiology},
  issn = {1664-302X}
}

  24. Valérie Marie Daugé, Catherine Philippe, Mahendra Mariadassou, Olivier Rué, Jean-Charles Martin, Marie-Noelle Rossignol, Nathalie Dourmap, Ljubica Svilar, Franck Tourniaire, Magali Monnoye, Deborah Jardet, Marie Bangratz, Sophie Holowacz, Sylvie Rabot, and Laurent Naudon. A probiotic mixture induces anxiolytic-and antidepressive-like effects in Fischer and maternally deprived Long Evans rats. Frontiers in Behavioral Neuroscience, 14 :214, 2020. 
    • @article{dauge2020,
  title = {A probiotic mixture induces anxiolytic-and antidepressive-like effects in Fischer and maternally deprived Long Evans rats},
  author = {Daugé, Valérie Marie and Philippe, Catherine and Mariadassou, Mahendra and Rué, Olivier and Martin, Jean-Charles and Rossignol, Marie-Noelle and Dourmap, Nathalie and Svilar, Ljubica and Tourniaire, Franck and Monnoye, Magali and Jardet, Deborah and Bangratz, Marie and Holowacz, Sophie and Rabot, Sylvie and Naudon, Laurent},
  journal = {Frontiers in Behavioral Neuroscience},
  volume = {14},
  pages = {214},
  year = {2020},
  url = {https://www.frontiersin.org/article/10.3389/fnbeh.2020.581296},
  doi = {10.3389/fnbeh.2020.581296},
  issn = {1662-5153},
  pdf = {https://www.frontiersin.org/article/10.3389/fnbeh.2020.581296/pdf}
}

  25. Fanny Canon, Mahendra Mariadassou, Marie-Bernadette Maillard, Hélène Falentin, Sandrine Parayre, Marie-Noëlle Madec, Florence Valence, Gwénaële Henry, Valérie Laroute, Marie-Line Daveran-Mingot, Muriel Cocaign-Bousquet, Anne Thierry, and Valérie Gagnaire. Function-driven design of lactic acid bacteria co-cultures to produce new fermented food associating milk and lupin. Frontiers in Microbiology, 11 :2850, 2020. 
    • @article{Canon2020,
  author = {Canon, Fanny and Mariadassou, Mahendra and Maillard, Marie-Bernadette and Falentin, Hélène and Parayre, Sandrine and Madec, Marie-Noëlle and Valence, Florence and Henry, Gwénaële and Laroute, Valérie and Daveran-Mingot, Marie-Line and Cocaign-Bousquet, Muriel and Thierry, Anne and Gagnaire, Valérie},
  title = {Function-driven design of lactic acid bacteria co-cultures to produce new fermented food associating milk and lupin},
  year = {2020},
  journal = {Frontiers in Microbiology},
  doi = {10.3389/fmicb.2020.584163},
  url = {https://www.frontiersin.org/articles/10.3389/fmicb.2020.584163},
  pdf = {https://www.frontiersin.org/articles/10.3389/fmicb.2020.584163/pdf},
  volume = {11},
  pages = {2850},
  issn = {1664-302X}
}

  26. Vincent Brault, Christine Keribin, and Mahendra Mariadassou. Consistency and Asymptotic Normality of Latent Blocks Model Estimators. Electron. J. Statist., 14(1) :1234–1268, 2020. 
    • @article{Brault2020,
  title = ,
  author = {Brault, Vincent and Keribin, Christine and Mariadassou, Mahendra},
  url = {https://hal.archives-ouvertes.fr/hal-01511960},
  journal = {Electron. J. Statist.},
  fjournal = {Electronic Journal of Statistics},
  year = {2020},
  volume = {14},
  number = {1},
  pages = {1234-1268},
  issn = {1935-7524},
  doi = {10.1214/20-EJS1695},
  sici = {1935-7524(2020)14:1<1234:CAANOL>2.0.CO;2-7},
  keywords = {Latent Block Model ; asymptotic normality ; Maximum Likelihood Estimate ; Concentration Inequality},
  pdf = {https://hal.archives-ouvertes.fr/hal-01511960/file/bj-BraultKeribinMariadassou.pdf},
  hal_id = {hal-01511960},
  hal_version = {v1}
}

  27. Antoine Bichat, Jonathan Plassais, Christophe Ambroise, and Mahendra Mariadassou. Incorporating phylogenetic information in microbiome abundance studies has no effect on detection power and FDR control. Frontiers in Microbiology, 11 :649, 2020. 
    • @article{Bichat2020,
  title = {Incorporating phylogenetic information in microbiome abundance studies has no effect on detection power and FDR control},
  author = {Bichat, Antoine and Plassais, Jonathan and Ambroise, Christophe and Mariadassou, Mahendra},
  year = {2020},
  volume = {11},
  pages = {649},
  url = {https://www.frontiersin.org/article/10.3389/fmicb.2020.00649},
  issn = {1664-302X},
  doi = {10.3389/fmicb.2020.00649},
  pdf = {https://www.frontiersin.org/articles/10.3389/fmicb.2020.00649/pdf},
  journal = {Frontiers in Microbiology}
}

  28. Xufei Zhang, Alexandra Grosfeld, Edek Williams, Daniel Vasiliauskas, Sharon Barretto, Lorraine Smith, Mahendra Mariadassou, Catherine Philippe, Fabienne Devime, Chloé Melchior, Guillaume Gourcerol, Nathalie Dourmap, Nicolas Lapaque, Pierre Larraufie, Hervé M. Blottière, Christine Herberden, Philippe Gerard, Jens F. Rehfeld, Ronaldo P. Ferraris, J. Christopher Fritton, Sandrine Ellero-Simatos, and Veronique Douard. Fructose malabsorption induces cholecystokinin expression in the ileum and cecum by changing microbiota composition and metabolism. The FASEB Journal, 33 :7126–7142, 2019.
    PMID: 30939042 
    • @article{Zhang2019,
  author = {Zhang, Xufei and Grosfeld, Alexandra and Williams, Edek and Vasiliauskas, Daniel and Barretto, Sharon and Smith, Lorraine and Mariadassou, Mahendra and Philippe, Catherine and Devime, Fabienne and Melchior, Chloé and Gourcerol, Guillaume and Dourmap, Nathalie and Lapaque, Nicolas and Larraufie, Pierre and Blottière, Hervé M. and Herberden, Christine and Gerard, Philippe and Rehfeld, Jens F. and Ferraris, Ronaldo P. and Fritton, J. Christopher and Ellero-Simatos, Sandrine and Douard, Veronique},
  title = {Fructose malabsorption induces cholecystokinin expression in the ileum and cecum by changing microbiota composition and metabolism},
  journal = {The FASEB Journal},
  volume = {33},
  pages = {7126 - 7142},
  year = {2019},
  doi = {10.1096/fj.201801526RR},
  note = {PMID: 30939042},
  pdf = {https://www.fasebj.org/doi/pdf/10.1096/fj.201801526RR},
  url = {https://doi.org/10.1096/fj.201801526RR},
  eprint = {https://doi.org/10.1096/fj.201801526RR}
}

  29. B. Wenden, M. Mariadassou, F. Chmielewski, and Y. Vitasse. Shifts in the temperature-sensitive periods for spring phenology in European beech and pedunculate oak clones across latitudes and over recent decades. Global Change Biology, 26(5) :1808–1819, 2019. 
    • @article{Wenden2019,
  author = {Wenden, B. and Mariadassou, M. and Chmielewski, F. and Vitasse, Y.},
  title = {Shifts in the temperature-sensitive periods for spring phenology in European beech and pedunculate oak clones across latitudes and over recent decades},
  journal = {Global Change Biology},
  year = {2019},
  doi = {https://doi.org/10.1111/gcb.14918},
  pdf = {https://onlinelibrary.wiley.com/doi/epdf/10.1111/gcb.14918},
  volume = {26},
  issue = {5},
  pages = {1808--1819}
}

  30. Zahra Safari, Magali Monnoye, Peter M. Abuja, Mahendra Mariadassou, Karl Kashofer, Philippe Gérard, and Kurt Zatloukal. Steatosis and gut microbiota dysbiosis induced by high fat diet are reversed by one-week chow diet administration. Nutrition Research, 71 :72–88, 2019. 
    • @article{Safari2019,
  title = {Steatosis and gut microbiota dysbiosis induced by high fat diet are reversed by one-week chow diet administration},
  journal = {Nutrition Research},
  year = {2019},
  issn = {0271-5317},
  volume = {71},
  pages = {72--88},
  doi = {https://doi.org/10.1016/j.nutres.2019.09.004},
  url = {http://www.sciencedirect.com/science/article/pii/S0271531719304270},
  pdf = {https://www.sciencedirect.com/science/article/pii/S0271531719304270/pdf?md5=db74ea2145f6141bcf6c83ddf8c5fb7d&pid=1-s2.0-S0271531719304270-main.pdf},
  author = {Safari, Zahra and Monnoye, Magali and Abuja, Peter M. and Mariadassou, Mahendra and Kashofer, Karl and Gérard, Philippe and Zatloukal, Kurt},
  keywords = {Reversibility, Microbiome, Liver Steatosis, NAFLD, High Fat Diet, Diet Switch}
}

  31. M. Vila Nova, K. Durimel, K. La, A. Felten, P. Bessières, M.-Y. Mistou, M. Mariadassou, and N. Radomski. Genetic and metabolic signatures of Salmonella enterica subsp. Enterica associated to animal sources at the pangenomic scale. BMC Genomics, 20 :814, 2019. 
    • @article{Vila2019,
  author = {Nova, M. Vila and Durimel, K. and La, K. and Felten, A. and Bessières, P. and Mistou, M.-Y. and Mariadassou, M. and Radomski, N.},
  title = {Genetic and metabolic signatures of \emph{Salmonella enterica subsp. {E}nterica} associated to animal sources at the pangenomic scale},
  year = {2019},
  volume = {20},
  pages = {814},
  journal = {BMC Genomics},
  doi = {doi:10.1186/s12864-019-6188-x},
  url = {https://doi.org/10.1186/s12864-019-6188-x},
  pdf = {https://bmcgenomics.biomedcentral.com/track/pdf/10.1186/s12864-019-6188-x}
}

  32. Kevin Nay, Maxence Jollet, Benedicte Goustard, Narjes Baati, Barbara Vernus, Maria Pontones, Luz Lefeuvre-Orfila, Claude Bendavid, Olivier Rué, Mahendra Mariadassou, Anne Bonnieu, Vincent Ollendorff, Patricia Lepage, Frédéric Derbré, and Christelle Koechlin-Ramonatxo. Gut bacteria are critical for optimal muscle function: a potential link with glucose homeostasis. American Journal of Physiology-Endocrinology and Metabolism, 317(1) :E158–E171, 2019.
    PMID: 31039010 
    • @article{Nay2019,
  author = {Nay, Kevin and Jollet, Maxence and Goustard, Benedicte and Baati, Narjes and Vernus, Barbara and Pontones, Maria and Lefeuvre-Orfila, Luz and Bendavid, Claude and Rué, Olivier and Mariadassou, Mahendra and Bonnieu, Anne and Ollendorff, Vincent and Lepage, Patricia and Derbré, Frédéric and Koechlin-Ramonatxo, Christelle},
  title = {Gut bacteria are critical for optimal muscle function: a potential link with glucose homeostasis},
  journal = {American Journal of Physiology-Endocrinology and Metabolism},
  volume = {317},
  number = {1},
  pages = {E158-E171},
  year = {2019},
  doi = {10.1152/ajpendo.00521.2018},
  note = {PMID: 31039010},
  pdf = {https://www.physiology.org/doi/pdf/10.1152/ajpendo.00521.2018},
  url = {https://doi.org/10.1152/ajpendo.00521.2018},
  eprint = {https://doi.org/10.1152/ajpendo.00521.2018}
}

  33. Hélène Falentin, Lucas Auer, Mahendra Mariadassou, Géraldine Pascal, Olivier Rué, Éric Dugat-Bony, Céline Delbès, Aurélie Nicolas, Étienne Rifa, Samuel Mondy, Malo Le Boulch, Laurent Cauquil, Guillermina Hernandez-Raquet, Sébastien Terrat, and Anne-Laure Abraham. Guide pratique à destination des biologistes, bioinformaticiens et statisticiens qui souhaitent s’initier aux analyses métabarcoding. Les Cahiers Techniques de l’INRA, 97 2019. 
    • @article{guide_pratique_metab,
  title = {Guide pratique à destination des biologistes, bioinformaticiens et statisticiens qui souhaitent s’initier aux analyses métabarcoding},
  author = {Falentin, Hélène and Auer, Lucas and Mariadassou, Mahendra and Pascal, Géraldine and Rué, Olivier and Dugat-Bony, Éric and Delbès, Céline and Nicolas, Aurélie and Rifa, Étienne and Mondy, Samuel and Le Boulch, Malo and Cauquil, Laurent and Hernandez-Raquet, Guillermina and Terrat, Sébastien and Abraham, Anne-Laure},
  year = {2019},
  journal = {Les Cahiers Techniques de l'INRA},
  volume = {97},
  optlink = {https://www6.inra.fr/cahier_des_techniques/Les-Cahiers-parus/Les-N-reguliers/2019/Cahier-N-97/Art4-ct97-2019},
  pdf = {https://www6.inra.fr/cahier_des_techniques/content/download/5278/53753/version/2/file/CT97_Art4_Falentin+et+al.pdf}
}

  34. Tiago P. Delforno, Thais Z. Macedo, Cédric Midoux, Gileno V. Lacerda, Olivier Rué, Mahendra Mariadassou, Valentin Loux, Maria B.A. Varesche, Théodore Bouchez, Ariane Bize, and Valéria M. Oliveira. Comparative metatranscriptomic analysis of anaerobic digesters treating anionic surfactant contaminated wastewater. Science of The Total Environment, 649 :482–494, 2019. 
    • @article{Delforno2019,
  title = {Comparative metatranscriptomic analysis of anaerobic digesters treating anionic surfactant contaminated wastewater},
  journal = {Science of The Total Environment},
  volume = {649},
  pages = {482 - 494},
  year = {2019},
  issn = {0048-9697},
  doi = {10.1016/j.scitotenv.2018.08.328},
  url = {http://www.sciencedirect.com/science/article/pii/S0048969718332996},
  author = {Delforno, Tiago P. and Macedo, Thais Z. and Midoux, Cédric and Lacerda, Gileno V. and Rué, Olivier and Mariadassou, Mahendra and Loux, Valentin and Varesche, Maria B.A. and Bouchez, Théodore and Bize, Ariane and Oliveira, Valéria M.},
  pdf = {https://www.sciencedirect.com/science/article/pii/S0048969718332996/pdfft?md5=4d93013993cd24f1821587eab8198ad1&pid=1-s2.0-S0048969718332996-main.pdf}
}

  35. Julien Chiquet, Stephane Robin, and Mahendra Mariadassou. Variational Inference for sparse network reconstruction from count data. Proceedings of the 36th International Conference on Machine Learning, 97 :1162–1171, 2019. 
    • @article{Chiquet2019,
  title = {Variational Inference for sparse network reconstruction from count data},
  author = {Chiquet, Julien and Robin, Stephane and Mariadassou, Mahendra},
  booktitle = {Proceedings of the 36th International Conference on Machine Learning},
  pages = {1162--1171},
  year = {2019},
  editor = {Chaudhuri, Kamalika and Salakhutdinov, Ruslan},
  volume = {97},
  series = {Proceedings of Machine Learning Research},
  address = {Long Beach, California, USA},
  month = jun,
  publisher = {PMLR},
  pdf = {http://proceedings.mlr.press/v97/chiquet19a/chiquet19a.pdf},
  optlink = {http://proceedings.mlr.press/v97/chiquet19a.html},
  month_numeric = {6}
}

  36. Gaetan Benoit, Mahendra Mariadassou, Stéphane Robin, Sophie Schbath, Pierre Peterlongo, and Claire Lemaitre. SimkaMin: fast and resource frugal de novo comparative metagenomics. Bioinformatics, 2019.
    btz685 
    • @article{Lemaitre2019,
  author = {Benoit, Gaetan and Mariadassou, Mahendra and Robin, Stéphane and Schbath, Sophie and Peterlongo, Pierre and Lemaitre, Claire},
  title = ,
  journal = {Bioinformatics},
  year = {2019},
  month = sep,
  abstract = ,
  issn = {1367-4803},
  doi = {10.1093/bioinformatics/btz685},
  url = {https://doi.org/10.1093/bioinformatics/btz685},
  note = {btz685},
  eprint = {http://oup.prod.sis.lan/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btz685/29520698/btz685.pdf},
  pdf = {https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btz685/29520698/btz685.pdf?guestAccessKey=b5eee976-0096-4a93-8f5e-de6e74103088},
  month_numeric = {9}
}

  37. Frédéric Escudié, Lucas Auer, Maria Bernard, Mahendra Mariadassou, Laurent Cauquil, Katia Vidal, Sarah Maman, Guillermina Hernandez-Raquet, Sylvie Combes, and Géraldine Pascal. FROGS: Find, Rapidly, OTUs with Galaxy Solution. Bioinformatics, 34(8) :1287–1294, 2018. 
    • @article{Escudie2018,
  title = {FROGS: Find, Rapidly, OTUs with Galaxy Solution},
  author = {Escudié, Frédéric and Auer, Lucas and Bernard, Maria and Mariadassou, Mahendra and Cauquil, Laurent and Vidal, Katia and Maman, Sarah and Hernandez-Raquet, Guillermina and Combes, Sylvie and Pascal, Géraldine},
  journal = {Bioinformatics},
  year = {2018},
  number = {8},
  pages = {1287-1294},
  volume = {34},
  doi = {10.1093/bioinformatics/btx791},
  pdf = {https://academic.oup.com/bioinformatics/article-pdf/34/8/1287/25120139/btx791.pdf?guestAccessKey=a3b4c7f6-d18e-43a0-971e-8f6422c67f56},
  url = {http://dx.doi.org/10.1093/bioinformatics/btx791}
}

  38. Jeffrey K. Cornuault, Marie-Agnès Petit, Mahendra Mariadassou, Leandro Benevides, Elisabeth Moncaut, Philippe Langella, Harry Sokol, and Marianne De Paepe. Phages infecting Faecalibacterium prausnitzii belong to novel viral genera that help to decipher intestinal viromes. Microbiome, 6 :65, 2018. 
    • @article{Cornuault2018,
  title = ,
  author = {Cornuault, Jeffrey K. and Petit, Marie-Agn{\`e}s and Mariadassou, Mahendra and Benevides, Leandro and Moncaut, Elisabeth and Langella, Philippe and Sokol, Harry and De Paepe, Marianne},
  journal = ,
  year = {2018},
  volume = {6},
  pages = {65},
  doi = {10.1186/s40168-018-0452-1},
  pdf = {https://microbiomejournal.biomedcentral.com/track/pdf/10.1186/s40168-018-0452-1},
  hal_id = {hal-01774632},
  hal_version = {v1},
  publisher = ,
  url = {http://hal.upmc.fr/hal-01774632}
}

  39. Julien Chiquet, Mahendra Mariadassou, and Stéphane Robin. Variational inference for probabilistic Poisson PCA. Ann. Appl. Stat., 4 :2674–2698, 2018. 
    • @article{Chiquet2018,
  title = ,
  author = {Chiquet, Julien and Mariadassou, Mahendra and Robin, Stéphane},
  url = {https://hal.archives-ouvertes.fr/hal-01608912},
  journal = {Ann. Appl. Stat.},
  volume = {4},
  pages = {2674--2698},
  year = {2018},
  keywords = { variational inference ; probabilistic PCA  ; poisson-lognormal model ; count data},
  pdf = {https://hal.archives-ouvertes.fr/hal-01608912/file/variational_%7BCE66C6D5-8A36-4981-BF8A-04F537890B08%7D.pdf},
  hal_id = {hal-01608912},
  doi = {10.1214/18-AOAS1177}
}

  40. Paul Bastide, Cécile Ané, Stéphane Robin, and Mahendra Mariadassou. Inference of Adaptive Shifts for Multivariate Correlated Traits. Systematic Biology, 67(4) :662–680, 2018. 
    • @article{Bastide2018,
  title = {Inference of Adaptive Shifts for Multivariate Correlated Traits},
  author = {Bastide, Paul and Ané, Cécile and Robin, Stéphane and Mariadassou, Mahendra},
  journal = {Systematic Biology},
  volume = {67},
  number = {4},
  pages = {662-680},
  year = {2018},
  doi = {10.1093/sysbio/syy005},
  pdf = {https://www.biorxiv.org/content/early/2017/06/05/146191.full.pdf},
  owner = {mmariadasso},
  timestamp = {2018.02.17},
  url = {http://dx.doi.org/10.1093/sysbio/syy005}
}

  41. Danilo Segovia, Ahmed Haouz, Darío Porley, Natalia Olivero, Mariano Martínez, Mahendra Mariadassou, Mabel Berois, Gwenaëlle André-Leroux, and Andrea Villarino. OH1 from Orf Virus: A New Tyrosine Phosphatase that Displays Distinct Structural Features and Triple Substrate Specificity. Journal of Molecular Biology, 429(18) :2816–2824, 2017. 
    • @article{Segovia2017,
  title = {OH1 from Orf Virus: A New Tyrosine Phosphatase that Displays Distinct Structural Features and Triple Substrate Specificity},
  author = {Segovia, Danilo and Haouz, Ahmed and Porley, Darío and Olivero, Natalia and Martínez, Mariano and Mariadassou, Mahendra and Berois, Mabel and André-Leroux, Gwenaëlle and Villarino, Andrea},
  journal = {Journal of Molecular Biology},
  year = {2017},
  number = {18},
  pages = {2816 - 2824},
  volume = {429},
  crossref = {2018},
  doi = {10.1016/j.jmb.2017.07.017},
  issn = {0022-2836},
  pdf = {https://www.sciencedirect.com/science/article/pii/S0022283617303674/pdfft?isDTMRedir=true&download=true},
  keywords = {crystallography, Orf virus, tyrosine phosphatase, phosphatidylinositol},
  timestamp = {2018.02.17},
  url = {http://www.sciencedirect.com/science/article/pii/S0022283617303674}
}

  42. Hela El Kafsi, Valentin Loux, Mahendra Mariadassou, Camille Blin, Hélène Chiapello, Anne-Laure Abraham, Emmanuelle Maguin, and Maarten van de Guchte. Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue. Scientific Reports, 7 :44331, 2017. 
    • @article{ElKafsi2017,
  title = {Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue},
  author = {El Kafsi, Hela and Loux, Valentin and Mariadassou, Mahendra and Blin, Camille and Chiapello, Hélène and Abraham, Anne-Laure and Maguin, Emmanuelle and van de Guchte, Maarten},
  journal = {Scientific Reports},
  year = {2017},
  pages = {44331},
  volume = {7},
  doi = {10.1038/srep44331},
  pdf = {https://www.nature.com/articles/srep44331.pdf},
  issn = {2045-2322},
  publisher = {Springer Nature},
  url = {http://dx.doi.org/10.1038/srep44331}
}

  43. Stéphanie-Marie Deutsch, Mahendra Mariadassou, Pierre Nicolas, Sandrine Parayre, Rozenn Le Guellec, Victoria Chuat, Vincent Peton, Caroline Le Maréchal, Julien Burati, Valentin Loux, Valérie Briard-Bion, Julien Jardin, Coline Plé, Benoît Foligné, Gwénaël Jan, and Hélène Falentin. Identification of proteins involved in the anti-inflammatory properties of Propionibacterium freudenreichii by means of a multi-strain study. Scientific Reports, 7 :46409, 2017. 
    • @article{Deutsch2017,
  title = {Identification of proteins involved in the anti-inflammatory properties of Propionibacterium freudenreichii by means of a multi-strain study},
  author = {Deutsch, Stéphanie-Marie and Mariadassou, Mahendra and Nicolas, Pierre and Parayre, Sandrine and Guellec, Rozenn Le and Chuat, Victoria and Peton, Vincent and Maréchal, Caroline Le and Burati, Julien and Loux, Valentin and Briard-Bion, Valérie and Jardin, Julien and Plé, Coline and Foligné, Benoît and Jan, Gwénaël and Falentin, Hélène},
  journal = {Scientific Reports},
  year = {2017},
  pages = {46409},
  volume = {7},
  doi = {10.1038/srep46409},
  pdf = {https://www.nature.com/articles/srep46409.pdf}
}

  44. Paul Bastide, Mahendra Mariadassou, and Stéphane Robin. Detection of adaptive shifts on phylogenies by using shifted stochastic processes on a tree. Journal of the Royal Statistical Society: Series B (Statistical Methodology), 79(4) :1067–1093, 2017. 
    • @article{Bastide2017,
  title = {Detection of adaptive shifts on phylogenies by using shifted stochastic processes on a tree},
  author = {Bastide, Paul and Mariadassou, Mahendra and Robin, Stéphane},
  journal = {Journal of the Royal Statistical Society: Series B (Statistical Methodology)},
  year = {2017},
  number = {4},
  pages = {1067--1093},
  volume = {79},
  doi = {10.1111/rssb.12206},
  issn = {1467-9868},
  keywords = {Adaptive shifts, Change point detection, Model selection, Ornstein–Uhlenbeck process, Phylogeny, Random process on tree},
  pdf = {https://rss.onlinelibrary.wiley.com/doi/epdf/10.1111/rssb.12206},
  url = {http://dx.doi.org/10.1111/rssb.12206}
}

  45. Lucas Auer, Mahendra Mariadassou, Michael O’Donohue, Christophe Klopp, and Guillermina Hernandez-Raquet. Analysis of large 16S rRNA Illumina data sets: Impact of singleton read filtering on microbial community description. Molecular Ecology Resources, 17(6) :e122–e132, 2017. 
    • @article{Auer2017,
  title = {Analysis of large 16S rRNA Illumina data sets: Impact of singleton read filtering on microbial community description},
  author = {Auer, Lucas and Mariadassou, Mahendra and O'Donohue, Michael and Klopp, Christophe and Hernandez-Raquet, Guillermina},
  journal = {Molecular Ecology Resources},
  year = {2017},
  volume = {17},
  number = {6},
  pages = {e122-e132},
  doi = {10.1111/1755-0998.12700},
  issn = {1755-0998},
  keywords = {16SrRNA, Illumina, metabarcoding, microbial diversity, singleton filtering},
  owner = {mmariadasso},
  timestamp = {2017.08.03},
  url = {http://dx.doi.org/10.1111/1755-0998.12700},
  pdf = {https://onlinelibrary.wiley.com/doi/epdf/10.1111/1755-0998.12700}
}

  46. César M. J. A. Metzger, Pepijn Luijckx, Gilberto Bento, Mahendra Mariadassou, and Dieter Ebert. The Red Queen lives: Epistasis between linked resistance loci. Evolution, 70(2) :480–487, 2016. 
    • @article{Metzger2016,
  title = {The Red Queen lives: Epistasis between linked resistance loci},
  author = {Metzger, César M. J. A. and Luijckx, Pepijn and Bento, Gilberto and Mariadassou, Mahendra and Ebert, Dieter},
  journal = {Evolution},
  year = {2016},
  number = {2},
  pages = {480--487},
  volume = {70},
  doi = {10.1111/evo.12854},
  issn = {1558-5646},
  url = {http://dx.doi.org/10.1111/evo.12854},
  pdf = {https://onlinelibrary.wiley.com/doi/epdf/10.1111/evo.12854}
}

  47. Adrien François, Denise Grebert, Moez Rhimi, Mahendra Mariadassou, Laurent Naudon, Sylvie Rabot, and Nicolas Meunier. Olfactory epithelium changes in germfree mice. Scientific Reports, 6 :24687, 2016. 
    • @article{Francois2016,
  title = {Olfactory epithelium changes in germfree mice},
  author = {François, Adrien and Grebert, Denise and Rhimi, Moez and Mariadassou, Mahendra and Naudon, Laurent and Rabot, Sylvie and Meunier, Nicolas},
  journal = {Scientific Reports},
  year = {2016},
  pages = {24687},
  volume = {6},
  doi = {10.1038/srep24687},
  pdf = {https://www.nature.com/articles/srep24687.pdf}
}

  48. Gaëtan Benoit, Pierre Peterlongo, Mahendra Mariadassou, Erwan Drezen, Sophie Schbath, Dominique Lavenier, and Claire Lemaitre. Multiple comparative metagenomics using multiset \textitk-mer counting. PeerJ Computer Science, 2 :e94, 2016. 
    • @article{Benoit2016,
  title = {Multiple comparative metagenomics using multiset \textit{k}-mer counting},
  author = {Benoit, Gaëtan and Peterlongo, Pierre and Mariadassou, Mahendra and Drezen, Erwan and Schbath, Sophie and Lavenier, Dominique and Lemaitre, Claire},
  journal = {PeerJ Computer Science},
  year = {2016},
  pages = {e94},
  volume = {2},
  doi = {10.7717/peerj-cs.94},
  issn = {2376-5992},
  keywords = {Comparative metagenomics, k-mer, k-mer counting, Metagenomic, Large scale, Ecological distance, Ngs},
  pdf = {https://peerj.com/articles/cs-94.pdf},
  url = {https://doi.org/10.7717/peerj-cs.94}
}

  49. Jeanne Alard, Véronique Lehrter, Moez Rhimi, Irène Mangin, Véronique Peucelle, Anne-Laure Abraham, Mahendra Mariadassou, Emmanuelle Maguin, Anne-Judith Waligora-Dupriet, Bruno Pot, Isabelle Wolowczuk, and Corinne Grangette. Beneficial metabolic effects of selected probiotics on diet-induced obesity and insulin resistance in mice are associated with improvement of dysbiotic gut microbiota. Environmental Microbiology, 18(5) :1484–1497, 2016. 
    • @article{Alard2016,
  title = {Beneficial metabolic effects of selected probiotics on diet-induced obesity and insulin resistance in mice are associated with improvement of dysbiotic gut microbiota},
  author = {Alard, Jeanne and Lehrter, Véronique and Rhimi, Moez and Mangin, Irène and Peucelle, Véronique and Abraham, Anne-Laure and Mariadassou, Mahendra and Maguin, Emmanuelle and Waligora-Dupriet, Anne-Judith and Pot, Bruno and Wolowczuk, Isabelle and Grangette, Corinne},
  journal = {Environmental Microbiology},
  year = {2016},
  volume = {18},
  number = {5},
  pages = {1484-1497},
  doi = {10.1111/1462-2920.13181},
  url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/1462-2920.13181},
  issn = {1462-2920},
  pmid = {26689997},
  pdf = {https://onlinelibrary.wiley.com/doi/epdf/10.1111/1462-2920.13181}
}

  50. Anne C. Roulin, Mahendra Mariadassou, Matthew D. Hall, Jean-Claude Walser, Christoph Haag, and Dieter Ebert. High genetic variation in resting-stage production in a metapopulation: Is there evidence for local adaptation? Evolution, 69(10) :2747–2756, 2015. 
    • @article{Roulin2015,
  title = {High genetic variation in resting-stage production in a metapopulation: Is there evidence for local adaptation?},
  author = {Roulin, Anne C. and Mariadassou, Mahendra and Hall, Matthew D. and Walser, Jean-Claude and Haag, Christoph and Ebert, Dieter},
  journal = {Evolution},
  year = {2015},
  number = {10},
  pages = {2747--2756},
  volume = {69},
  doi = {10.1111/evo.12770},
  pdf = {https://onlinelibrary.wiley.com/doi/epdf/10.1111/evo.12770},
  issn = {1558-5646},
  url = {http://dx.doi.org/10.1111/evo.12770}
}

  51. Mahendra Mariadassou, Samuel Pichon, and Dieter Ebert. Microbial ecosystems are dominated by specialist taxa. Ecology Letters, 18(9) :974–982, 2015. 
    • @article{Mariadassou2015,
  title = {Microbial ecosystems are dominated by specialist taxa},
  author = {Mariadassou, Mahendra and Pichon, Samuel and Ebert, Dieter},
  journal = {Ecology Letters},
  year = {2015},
  number = {9},
  pages = {974--982},
  volume = {18},
  doi = {10.1111/ele.12478},
  pdf = {https://onlinelibrary.wiley.com/doi/epdf/10.1111/ele.12478},
  issn = {1461-0248},
  url = {http://dx.doi.org/10.1111/ele.12478},
  optlink = {http://genome.jouy.inra.fr/~mmariadasso/website/source/specificity_methods.tar.gz}
}

  52. Mahendra Mariadassou and Catherine Matias. Convergence of the groups posterior distribution in latent or stochastic block models. Bernoulli, 21(1) :537–573, 2015. 
    • @article{Mariadassou2015a,
  title = {Convergence of the groups posterior distribution in latent or stochastic block models},
  author = {Mariadassou, Mahendra and Matias, Catherine},
  journal = {Bernoulli},
  year = {2015},
  month = feb,
  number = {1},
  pages = {537--573},
  volume = {21},
  doi = {10.3150/13-BEJ579},
  pdf = {https://projecteuclid.org/download/pdfview_1/euclid.bj/1426597081},
  fjournal = {Bernoulli},
  publisher = {Bernoulli Society for Mathematical Statistics and Probability},
  url = {http://dx.doi.org/10.3150/13-BEJ579},
  month_numeric = {2}
}

  53. Valentin Loux, Mahendra Mariadassou, Sintia Almeida, Hélène Chiapello, Amal Hammani, Julien Buratti, Annie Gendrault, Valérie Barbe, Jean-Marc Aury, Stéphanie-Marie Deutsch, Sandrine Parayre, Marie-Noëlle Madec, Victoria Chuat, Gwenaël Jan, Pierre Peterlongo, Vasco Azevedo, Yves Le Loir, and Hélène Falentin. Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii. BMC Genomics, 16(1) :296, 2015. 
    • @article{Loux2015,
  title = {Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii},
  author = {Loux, Valentin and Mariadassou, Mahendra and Almeida, Sintia and Chiapello, Hélène and Hammani, Amal and Buratti, Julien and Gendrault, Annie and Barbe, Valérie and Aury, Jean-Marc and Deutsch, Stéphanie-Marie and Parayre, Sandrine and Madec, Marie-Noëlle and Chuat, Victoria and Jan, Gwenaël and Peterlongo, Pierre and Azevedo, Vasco and Le Loir, Yves and Falentin, Hélène},
  journal = {BMC Genomics},
  year = {2015},
  number = {1},
  pages = {296},
  volume = {16},
  doi = {10.1186/s12864-015-1467-7},
  pdf = {https://bmcgenomics.biomedcentral.com/track/pdf/10.1186/s12864-015-1467-7},
  issn = {1471-2164},
  url = {http://dx.doi.org/10.1186/s12864-015-1467-7}
}

  54. Anne Goelzer, Jan Muntel, Victor Chubukov, Matthieu Jules, Eric Prestel, Rolf Nölker, Mahendra Mariadassou, Stéphane Aymerich, Michael Hecker, Philippe Noirot, Dörte Becher, and Vincent Fromion. Quantitative prediction of genome-wide resource allocation in bacteria. Metabolic Engineering, 32 :232–243, 2015. 
    • @article{Goelzer2015,
  title = {Quantitative prediction of genome-wide resource allocation in bacteria},
  author = {Goelzer, Anne and Muntel, Jan and Chubukov, Victor and Jules, Matthieu and Prestel, Eric and Nölker, Rolf and Mariadassou, Mahendra and Aymerich, Stéphane and Hecker, Michael and Noirot, Philippe and Becher, Dörte and Fromion, Vincent},
  journal = {Metabolic Engineering},
  year = {2015},
  pages = {232 - 243},
  volume = {32},
  doi = {10.1016/j.ymben.2015.10.003},
  issn = {1096-7176},
  keywords = {Resource allocation},
  url = {http://www.sciencedirect.com/science/article/pii/S1096717615001317}
}

  55. Vincent Brault and Mahendra Mariadassou. Co-clustering through Latent Bloc Model: a Review. Journal de la SFdS, 156(3) :120–139, 2015. 
    • @article{Brault2015,
  title = {Co-clustering through Latent Bloc Model: a Review},
  author = {Brault, Vincent and Mariadassou, Mahendra},
  journal = {Journal de la SFdS},
  year = {2015},
  number = {3},
  pages = {120--139},
  volume = {156},
  pdf = {http://journal-sfds.fr/article/view/474/448},
  optlink = {http://revues-sfds.math.cnrs.fr/index.php/J-SFdS/article/view/474}
}

  56. Clarissa Santos Rocha, Ana Cristina Gomes-Santos, Thais Garcias Moreira, Marcela de Azevedo, Tessalia Diniz Luerce, Mahendra Mariadassou, Ana Paula Longaray Delamare, Philippe Langella, Emmanuelle Maguin, Vasco Azevedo, Ana Maria Caetano de Faria, Anderson Miyoshi, and Maarten van de Guchte. Local and Systemic Immune Mechanisms Underlying the Anti-Colitis Effects of the Dairy Bacterium \textitLactobacillus delbrueckii. PLoS ONE, 9(1) :e85923, 2014. 
    • @article{SantosRocha2014,
  title = {Local and Systemic Immune Mechanisms Underlying the Anti-Colitis Effects of the Dairy Bacterium \textit{Lactobacillus delbrueckii}},
  author = {Santos Rocha, Clarissa and Gomes-Santos, Ana Cristina and Garcias Moreira, Thais and de Azevedo, Marcela and Diniz Luerce, Tessalia and Mariadassou, Mahendra and Longaray Delamare, Ana Paula and Langella, Philippe and Maguin, Emmanuelle and Azevedo, Vasco and Caetano de Faria, Ana Maria and Miyoshi, Anderson and van de Guchte, Maarten},
  journal = {PLoS ONE},
  year = {2014},
  number = {1},
  pages = {e85923},
  volume = {9},
  doi = {10.1371/journal.pone.0085923},
  pdf = {https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0085923&type=printable},
  publisher = {Public Library of Science},
  url = {http://dx.doi.org/10.1371%2Fjournal.pone.0085923}
}

  57. Mahendra Mariadassou and François-Xavier Pellay. Identification of amino acids in mitochondrially encoded proteins that correlate with lifespan. Exp Gerontol, 56 :53–58, 2014. 
    • @article{Mariadassou2014,
  title = {Identification of amino acids in mitochondrially encoded proteins that correlate with lifespan.},
  author = {Mariadassou, Mahendra and Pellay, Fran{\c{c}}ois-Xavier},
  journal = {Exp Gerontol},
  year = {2014},
  pages = {53--58},
  volume = {56},
  doi = {10.1016/j.exger.2014.03.009},
  pdf = {},
  pmid = {24657631},
  url = {http://dx.doi.org/10.1016/j.exger.2014.03.009}
}

  58. Jean-François Gibrat, Mahendra Mariadassou, Pierre Boudinot, and Bernard Delmas. Analyses of the radiation of birnaviruses from diverse host phyla and of their evolutionary affinities with other double-stranded RNA and positive strand RNA viruses using robust structure-based multiple sequence alignments and advanced phylogenetic methods. BMC Evol Biol, 13 :154, 2013. 
    • @article{Gibrat2013,
  title = {Analyses of the radiation of birnaviruses from diverse host phyla and of their evolutionary affinities with other double-stranded RNA and positive strand RNA viruses using robust structure-based multiple sequence alignments and advanced phylogenetic methods.},
  author = {Gibrat, Jean-François and Mariadassou, Mahendra and Boudinot, Pierre and Delmas, Bernard},
  journal = {BMC Evol Biol},
  year = {2013},
  pages = {154},
  volume = {13},
  doi = {10.1186/1471-2148-13-154},
  pdf = {https://bmcevolbiol.biomedcentral.com/track/pdf/10.1186/1471-2148-13-154},
  pmid = {23865988},
  url = {http://dx.doi.org/10.1186/1471-2148-13-154}
}

  59. Mahendra Mariadassou, Avner Bar-Hen, and Hirohisa Kishino. Taxon influence index: assessing taxon-induced incongruities in phylogenetic inference. Syst Biol, 61(2) :337–345, 2012. 
    • @article{Mariadassou2012,
  title = {Taxon influence index: assessing taxon-induced incongruities in phylogenetic inference.},
  author = {Mariadassou, Mahendra and Bar-Hen, Avner and Kishino, Hirohisa},
  journal = {Syst Biol},
  year = {2012},
  number = {2},
  pages = {337--345},
  volume = {61},
  doi = {10.1093/sysbio/syr129},
  pdf = {https://academic.oup.com/sysbio/article-pdf/61/2/337/24563223/syr129.pdf},
  pmid = {22228800},
  url = {http://dx.doi.org/10.1093/sysbio/syr129},
  optlink = {http://genome.jouy.inra.fr/~mmariadasso/website/source/TaxonInfluenceIndex.tar.gz}
}

  60. Agnieszka K Szczepankowska, Eric Prestel, Mahendra Mariadassou, Jacek K Bardowski, and Elena Bidnenko. Phylogenetic and complementation analysis of a single-stranded DNA binding protein family from lactococcal phages indicates a non-bacterial origin. PLoS One, 6(11) :e26942, 2011. 
    • @article{Szczepankowska2011,
  title = {Phylogenetic and complementation analysis of a single-stranded DNA binding protein family from lactococcal phages indicates a non-bacterial origin.},
  author = {Szczepankowska, Agnieszka K and Prestel, Eric and Mariadassou, Mahendra and Bardowski, Jacek K and Bidnenko, Elena},
  journal = {PLoS One},
  year = {2011},
  number = {11},
  pages = {e26942},
  volume = {6},
  doi = {10.1371/journal.pone.0026942},
  pdf = {https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0026942&type=printable},
  pii = {PONE-D-11-14025},
  pmid = {22073223},
  url = {http://dx.doi.org/10.1371/journal.pone.0026942}
}

  61. Mahendra Mariadassou, Stéphane Robin, and Corinne Vacher. Uncovering latent structure in valued graphs: A variational approach. Ann. Appl. Stat., 4(2) :715–742, 2010. 
    • @article{Mariadassou2010,
  title = {Uncovering latent structure in valued graphs: A variational approach},
  author = {Mariadassou, Mahendra and Robin, Stéphane and Vacher, Corinne},
  journal = {Ann. Appl. Stat.},
  year = {2010},
  month = jun,
  number = {2},
  pages = {715--742},
  volume = {4},
  doi = {10.1214/10-AOAS361},
  pdf = {https://projecteuclid.org/download/pdfview_1/euclid.aoas/1280842137},
  publisher = {The Institute of Mathematical Statistics},
  url = {http://dx.doi.org/10.1214/10-AOAS361},
  month_numeric = {6}
}

  62. Mahendra Mariadassou and A. Bar-Hen. Concentration inequality for evolutionary trees. Journal of Multivariate Analysis, 100 :2055–2064, 2009. 
    • @article{Mariadassou2009,
  title = {Concentration inequality for evolutionary trees},
  author = {Mariadassou, Mahendra and Bar-Hen, A.},
  journal = {Journal of Multivariate Analysis},
  year = {2009},
  pages = {2055--2064},
  volume = {100},
  doi = {10.1016/j.jmva.2009.02.015},
  pdf = {https://www.sciencedirect.com/science/article/pii/S0047259X09000499/pdfft?md5=88a8e5ccfce29decee3861fd5ff6e7a4&pid=1-s2.0-S0047259X09000499-main.pdf}
}

  63. Avner Bar-Hen, Mahendra Mariadassou, Marie-Anne Poursat, and Philippe Vandenkoornhuyse. Influence function for robust phylogenetic reconstructions. Mol Biol Evol, 25(5) :869–873, 2008. 
    • @article{Bar-Hen2008,
  title = {Influence function for robust phylogenetic reconstructions.},
  author = {Bar-Hen, Avner and Mariadassou, Mahendra and Poursat, Marie-Anne and Vandenkoornhuyse, Philippe},
  journal = {Mol Biol Evol},
  year = {2008},
  month = may,
  number = {5},
  pages = {869--873},
  volume = {25},
  doi = {10.1093/molbev/msn030},
  pdf = {https://academic.oup.com/mbe/article-pdf/25/5/869/4031426/msn030.pdf},
  keywords = {Data Interpretation, Statistical; Evolution; Fungi; Likelihood Functions; Phylogeny; Software; Statistics as Topic},
  pmid = {18263606},
  url = {http://dx.doi.org/10.1093/molbev/msn030},
  month_numeric = {5}
}


  1. Mahendra. Mariadassou, Julien. Chiquet, and Stéphane. Robin. Probabilistic PCA for count data in microbial ecology. In: Proceedings of the 2018 JOBIM edition, pp. 30–32 2018. 
    • @inproceedings{MCR18,
  author = {Mariadassou, Mahendra. and Chiquet, Julien. and Robin, Stéphane.},
  title = {Probabilistic PCA for count data in microbial ecology},
  booktitle = {Proceedings of the 2018 JOBIM edition},
  year = {2018},
  pages = {30 -- 32},
  url = {https://jobim2018.sciencesconf.org/data/pages/Book_JOBIM2018_V3.pdf}
}

  2. Bénédicte Wenden and M Mariadassou. Sweet cherry phenology in the context of climate change: A systems biology approach. In: Acta Horticulturae, pp. 31–38 2017. 
    • @inproceedings{Wenden2017b,
  title = {Sweet cherry phenology in the context of climate change: A systems biology approach},
  author = {Wenden, Bénédicte and Mariadassou, M},
  year = {2017},
  pages = {31-38},
  volume = {1162},
  booktitle = {Acta Horticulturae},
  doi = {10.17660/ActaHortic.2017.1162.6}
}

  3. B. Wenden, M Mariadassou, J.A. Campoy, J. Quero-Garcia, and E. Dirlewanger. Statistical analysis of trends in sweet cherry flowering data across Europe. In: Acta Horticulturae, pp. 215–220 2017. 
    • @inproceedings{Wenden2017a,
  title = {Statistical analysis of trends in sweet cherry flowering data across Europe},
  author = {Wenden, B. and Mariadassou, M and Campoy, J.A. and Quero-Garcia, J. and Dirlewanger, E.},
  year = {2017},
  pages = {215--220},
  volume = {1160},
  booktitle = {Acta Horticulturae},
  doi = {10.17660/ActaHortic.2017.1160.31}
}


  1. Julien Chiquet, Marie-Josée Cros, Mahendra Mariadassou, Nathalie Peyrard, and Stéphane Robin. The Poisson Log-Normal Model: A Generic Framework for Analyzing Joint Abundance Distributions. In: Gimenez, O. and Peyrard, N. (eds.) Statistical Approaches for Hidden Variables in Ecology, pp. 157–180, Wiley-ISTE, 2022. 
    • @inbook{Chiquet2022,
  title = {The Poisson Log-Normal Model: A Generic Framework for Analyzing Joint Abundance Distributions},
  pages = {157--180},
  booktitle = {Statistical Approaches for Hidden Variables in Ecology},
  publisher = {Wiley-ISTE},
  year = {2022},
  author = {Chiquet, Julien and Cros, Marie-Josée and Mariadassou, Mahendra and Peyrard, Nathalie and Robin, Stéphane},
  editor = {Gimenez, Olivier and Peyrard, Nathalie},
  month = dec,
  isbn = {9781789450477},
  optlink = {https://www.amazon.com/dp/1789450470/},
  month_numeric = {12}
}

  2. Julien Chiquet, Marie-Josée Cros, Mahendra Mariadassou, Nathalie Peyrard, and Stéphane Robin. Le modèle Poisson log-normal pour l’analyse de distributions jointes d’abondance. In: Gimenez, O. and Peyrard, N. (eds.) Approches statistiques pour les variables cachées en écologie, pp. 175–199, ISTE group, 2022. 
    • @inbook{Chiquet2023,
  title = {Le modèle Poisson log-normal pour l'analyse de distributions jointes d'abondance},
  pages = {175--199},
  booktitle = {Approches statistiques pour les variables cachées en écologie},
  publisher = {ISTE group},
  year = {2022},
  author = {Chiquet, Julien and Cros, Marie-Josée and Mariadassou, Mahendra and Peyrard, Nathalie and Robin, Stéphane},
  editor = {Gimenez, Olivier and Peyrard, Nathalie},
  month = aug,
  isbn = {9781789480474},
  optlink = {https://www.amazon.fr/Approches-statistiques-variables-cach%C3%A9es-%C3%A9cologie/dp/1789480477},
  month_numeric = {8}
}

  3. Paul Bastide, Mahendra Mariadassou, and Stéphane Robin. Modèles d’évolution de caractères continus. In: Didier, G. and Guindon, S. (eds.) Modèles et méthodes pour l’évolution biologique, pp. 47–85, ISTE Group, 2022. 
    • @inbook{bastide:hal-03762880,
  title = ,
  author = {Bastide, Paul and Mariadassou, Mahendra and Robin, Stéphane},
  editor = {Didier, Gilles and Guindon, Stéphane},
  url = {https://hal.archives-ouvertes.fr/hal-03762880},
  booktitle = ,
  publisher = ,
  pages = {47 - 85},
  year = {2022},
  month = jul,
  doi = {10.51926/iste.9069.ch3},
  keywords = {modèle d'évolution ; traits quantitatifs ; méthodes phylogénétiques comparatives ; mouvement brownien ; processus d'Ornstein-Uhlenbeck ; calcul de vraisemblance},
  pdf = {https://hal.archives-ouvertes.fr/hal-03762880/file/chapitre_hal.pdf},
  hal_id = {hal-03762880},
  hal_version = {v1},
  month_numeric = {7}
}

  4. Mahendra Mariadassou, Avner Bar-Hen, and Hirohisa Kishino. Tree Evaluation and Robustness Testing. In: Ranganathan, S., Gribskov, M., Nakai, K., and Schönbach, C. (eds.) Encyclopedia of Bioinformatics and Computational Biology, pp. 736–745, Academic Press, Oxford, 2019. 
    • @inbook{Mariadassou2018,
  title = {Tree Evaluation and Robustness Testing},
  editor = {Ranganathan, Shoba and Gribskov, Michael and Nakai, Kenta and Schönbach, Christian},
  booktitle = {Encyclopedia of Bioinformatics and Computational Biology},
  publisher = {Academic Press},
  address = {Oxford},
  pages = {736 - 745},
  year = {2019},
  isbn = {978-0-12-811432-2},
  doi = {10.1016/B978-0-12-809633-8.20259-8},
  url = {http://www.sciencedirect.com/science/article/pii/B9780128096338202598},
  pdf = {https://www.sciencedirect.com/science/article/pii/B9780128096338202598/pdfft?md5=eb60d2910602e5597274430d499a8b56&pid=3-s2.0-B9780128096338202598-main.pdf},
  author = {Mariadassou, Mahendra and Bar-Hen, Avner and Kishino, Hirohisa},
  keywords = {Bootstrap, Model misspecification, Outlier detection, Phylogenetic inference, Robustness, Tree distances}
}



    1. F. Irlinger, M. Mariadassou, E. Dugat-Bony, O. Rué, C.Neuvéglise, P. Renault, E. Rifa, S. Theil, V. Loux, C. Cruaud, F. Gavory, V. Barbe, R. Lasbleiz, F. Gaucheron, C. Spelle, and C. Delbès. Evidence of microbial signatures in French Protected Designation of Origin milks and cheeses, 2024. 
      • @unpublished{Irlinger2024,
  author = {Irlinger, F. and Mariadassou, M. and Dugat-Bony, E. and Rué, O. and C.Neuvéglise and Renault, P. and Rifa, E. and Theil, S. and Loux, V. and Cruaud, C. and Gavory, F. and Barbe, V. and Lasbleiz, R. and Gaucheron, F. and Spelle, C. and Delbès, C.},
  title = {Evidence of microbial signatures in French Protected Designation of Origin milks and cheeses},
  year = {2024},
  journal = {submitted to Nature Food},
  owner = {mmariadasso},
  timestamp = {2023.12.06}
}

    2. Benoit Goutorbe, Anne-Laure Abraham, Mahendra Mariadassou, Anne Plauzolles, Ghislain Bidaut, Philippe Halfon, and Sophie Schbath. Characterizing the limits of shallow shotgun metagenomics for taxonomic profiling of human gut microbiota in clinical studies, 2023. 
      • @unpublished{goutorbe2022characterizing,
  title = {Characterizing the limits of shallow shotgun metagenomics for taxonomic profiling of human gut microbiota in clinical studies},
  author = {Goutorbe, Benoit and Abraham, Anne-Laure and Mariadassou, Mahendra and Plauzolles, Anne and Bidaut, Ghislain and Halfon, Philippe and Schbath, Sophie},
  year = {2023},
  journal = {submitted to mSystems},
  volume = {under revision}
}

    3. Camille Champion, Raphaelle Momal, Emmanuelle Le Chatelier, Mahendra Mariadassou, and Magali Berland. OneNet – One network to rule them all: consensus network inference from microbiome data, 2023. 
      • @unpublished{Champion2023,
  author = {Champion, Camille and Momal, Raphaelle and Chatelier, Emmanuelle Le and Mariadassou, Mahendra and Berland, Magali},
  title = {OneNet – One network to rule them all: consensus network inference from microbiome data},
  journal = {submitted to Plos Comp. Biol.},
  year = {2023},
  doi = {10.1101/2023.05.05.539529},
  owner = {mmariadasso},
  publisher = {Cold Spring Harbor Laboratory},
  timestamp = {2023.12.06}
}

    Mahendra Mariadassou

    Researcher at Inrae

    firstname.lastname@inrae.fr
    firstname.lastname@cri-paris.org

    mahendra-mariadassou
    in/mahendra-mariadassou-22830224/

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